A likelihood ratio test for evolutionary rate shifts and functional divergence among proteins (Q30857003)

11 September 2017

A likelihood ratio test for evolutionary rate shifts and functional divergence among proteins (English)

1 reference

11 September 2017

Knudsen B

1

1 reference

PMCID

64713

11 September 2017

Miyamoto MM

series ordinal

2

1 reference

PMCID

64713

11 September 2017

language of work or name

English

0 references

publication date

1 December 2001

1 reference

Proceedings of the National Academy of Sciences of the United States of America

11 September 2017

1 reference

11 September 2017

98

1 reference

11 September 2017

14512-14517

1 reference

11 September 2017

25

1 reference

Functional divergence in the caspase gene family and altered functional constraints: statistical analysis and prediction

11 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=64713

21 June 2018

From genome to function

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=64713

Molecular and morphological supertrees for eutherian (placental) mammals

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=64713

Molecular phylogenetics and the origins of placental mammals

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=64713

Parallel adaptive radiations in two major clades of placental mammals

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=64713

Function-structure analysis of proteins using covarion-based evolutionary approaches: Elongation factors

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=64713

Statistical methods for detecting molecular adaptation

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=64713

MYC oncogenes and human neoplastic disease

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=64713

Coevolving protein residues: maximum likelihood identification and relationship to structure.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=64713

The molecular role of Myc in growth and transformation: recent discoveries lead to new insights.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=64713

The structural basis of molecular adaptation

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=64713

Predicting functions from protein sequences--where are the bottlenecks?

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=64713

Modeling the covarion hypothesis of nucleotide substitution.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=64713

PAML: a program package for phylogenetic analysis by maximum likelihood

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=64713

Phylogenetic methods come of age: testing hypotheses in an evolutionary context

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=64713

CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=64713

Evolutionary trees from DNA sequences: A maximum likelihood approach

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=64713

An improved method for determining codon variability in a gene and its application to the rate of fixation of mutations in evolution

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=64713

The rapid generation of mutation data matrices from protein sequences

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=64713

Maximum-likelihood approach for gene family evolution under functional divergence.

21 June 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.251526398

Maximum-likelihood phylogenetic analysis under a covarion-like model.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.251526398

Unusually high evolutionary rate of the elongation factor 1 alpha genes from the Ciliophora and its impact on the phylogeny of eukaryotes

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.251526398

Three-dimensional cluster analysis identifies interfaces and functional residue clusters in proteins

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.251526398

Differential selection after duplication in mammalian developmental genes.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.251526398

ADAPTSITE: detecting natural selection at single amino acid sites

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.251526398

Statistical methods for testing functional divergence after gene duplication

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.251526398

Evolution of CpG islands within the myc gene family

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.251526398

c-myc gene sequences and the phylogeny of bats and other eutherian mammals

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.251526398

21 January 2018

Identifiers

DOI

10.1073/PNAS.251526398

1 reference

11 September 2017

0 references

1 reference

11 September 2017

1 reference

PMCID

64713