Genome-Wide Mapping of Uncapped and Cleaved Transcripts Reveals a Role for the Nuclear mRNA Cap-Binding Complex in Cotranslational RNA Decay in Arabidopsis. (Q48290299)

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English	Genome-Wide Mapping of Uncapped and Cleaved Transcripts Reveals a Role for the Nuclear mRNA Cap-Binding Complex in Cotranslational RNA Decay in Arabidopsis.	scientific article

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scholarly article

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25 March 2020

Genome-Wide Mapping of Uncapped and Cleaved Transcripts Reveals a Role for the Nuclear mRNA Cap-Binding Complex in Cotranslational RNA Decay in Arabidopsis (English)

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25 March 2020

1

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25 March 2020

Matthew R Willmann

2

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25 March 2020

Stephen J Anderson

3

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25 March 2020

Brian D Gregory

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25 March 2020

author name string

Matthew R Willmann

2

1 reference

Europe PubMed Central

10 February 2018

http://europepmc.org/abstract/MED/27758893

Stephen J Anderson

3

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Europe PubMed Central

10 February 2018

http://europepmc.org/abstract/MED/27758893

publication date

7 October 2016

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25 March 2020

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25 March 2020

28

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25 March 2020

2385-2397

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25 March 2020

Identification of novel conserved peptide uORF homology groups in Arabidopsis and rice reveals ancient eukaryotic origin of select groups and preferential association with transcription factor-encoding genes

1 reference

https://pubmed.ncbi.nlm.nih.gov/27758893

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Construction of Parallel Analysis of RNA Ends (PARE) libraries for the study of cleaved miRNA targets and the RNA degradome

1 reference

https://pubmed.ncbi.nlm.nih.gov/27758893

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The miRNA156/157 recognition element in the 3' UTR of the Arabidopsis SBP box gene SPL3 prevents early flowering by translational inhibition in seedlings.

1 reference

https://pubmed.ncbi.nlm.nih.gov/27758893

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Endogenous siRNA and miRNA targets identified by sequencing of the Arabidopsis degradome

1 reference

https://pubmed.ncbi.nlm.nih.gov/27758893

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Improved genome-wide mapping of uncapped and cleaved transcripts in eukaryotes--GMUCT 2.0.

1 reference

https://pubmed.ncbi.nlm.nih.gov/27758893

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Molecular mechanism of microRNA396 mediating pistil development in Arabidopsis

1 reference

https://pubmed.ncbi.nlm.nih.gov/27758893

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Evidence of abundant stop codon readthrough in Drosophila and other metazoa

1 reference

https://pubmed.ncbi.nlm.nih.gov/27758893

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Evidence of efficient stop codon readthrough in four mammalian genes

1 reference

https://pubmed.ncbi.nlm.nih.gov/27758893

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Regulation of plant translation by upstream open reading frames.

1 reference

https://pubmed.ncbi.nlm.nih.gov/27758893

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

MicroRNAs inhibit the translation of target mRNAs on the endoplasmic reticulum in Arabidopsis

1 reference

https://pubmed.ncbi.nlm.nih.gov/27758893

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Widespread regulation of translation by elongation pausing in heat shock

1 reference

https://pubmed.ncbi.nlm.nih.gov/27758893

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Regulation of flowering time and floral organ identity by a MicroRNA and its APETALA2-like target genes

1 reference

https://pubmed.ncbi.nlm.nih.gov/27758893

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The sequential action of miR156 and miR172 regulates developmental timing in Arabidopsis

1 reference

https://pubmed.ncbi.nlm.nih.gov/27758893

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

A conserved upstream open reading frame mediates sucrose-induced repression of translation

1 reference

https://pubmed.ncbi.nlm.nih.gov/27758893

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

RiboAbacus: a model trained on polyribosome images predicts ribosome density and translational efficiency from mammalian transcriptomes

1 reference

https://pubmed.ncbi.nlm.nih.gov/27758893

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Translational landscape of photomorphogenic Arabidopsis

1 reference

https://pubmed.ncbi.nlm.nih.gov/27758893

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Posttranscriptional regulation by the upstream open reading frame of the phosphoethanolamine N-methyltransferase gene

1 reference

https://pubmed.ncbi.nlm.nih.gov/27758893

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Ribosome profiling reveals pervasive and regulated stop codon readthrough in Drosophila melanogaster

1 reference

https://pubmed.ncbi.nlm.nih.gov/27758893

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Arabidopsis ribosomal proteins control developmental programs through translational regulation of auxin response factors

1 reference

https://pubmed.ncbi.nlm.nih.gov/27758893

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

STAR: ultrafast universal RNA-seq aligner

1 reference

https://pubmed.ncbi.nlm.nih.gov/27758893

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Novel features of the XRN-family in Arabidopsis: evidence that AtXRN4, one of several orthologs of nuclear Xrn2p/Rat1p, functions in the cytoplasm

1 reference

https://pubmed.ncbi.nlm.nih.gov/27758893

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Sucrose induction of Arabidopsis miR398 represses two Cu/Zn superoxide dismutases

1 reference

https://pubmed.ncbi.nlm.nih.gov/27758893

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

A link between RNA metabolism and silencing affecting Arabidopsis development.

1 reference

https://pubmed.ncbi.nlm.nih.gov/27758893

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Widespread Co-translational RNA Decay Reveals Ribosome Dynamics

1 reference

https://pubmed.ncbi.nlm.nih.gov/27758893

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Cap-binding complex (CBC).

1 reference

https://pubmed.ncbi.nlm.nih.gov/27758893

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The exosome and RNA quality control in the nucleus

1 reference

https://pubmed.ncbi.nlm.nih.gov/27758893

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Involvement of the nuclear cap-binding protein complex in alternative splicing in Arabidopsis thaliana

1 reference

https://pubmed.ncbi.nlm.nih.gov/27758893

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

psRNATarget: a plant small RNA target analysis server

1 reference

https://pubmed.ncbi.nlm.nih.gov/27758893

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

A new MIF4G domain-containing protein, CTIF, directs nuclear cap-binding protein CBP80/20-dependent translation

1 reference

https://pubmed.ncbi.nlm.nih.gov/27758893

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

BAIUCAS: a novel BLAST-based algorithm for the identification of upstream open reading frames with conserved amino acid sequences and its application to the Arabidopsis thaliana genome.

1 reference

https://pubmed.ncbi.nlm.nih.gov/27758893

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Co-translational mRNA decay in Saccharomyces cerevisiae

1 reference

https://pubmed.ncbi.nlm.nih.gov/27758893

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Ribosome profiling of mouse embryonic stem cells reveals the complexity and dynamics of mammalian proteomes

1 reference

https://pubmed.ncbi.nlm.nih.gov/27758893

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

An evolutionarily conserved mechanism for controlling the efficiency of protein translation

1 reference

https://pubmed.ncbi.nlm.nih.gov/27758893

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identification of conserved and novel microRNAs that are responsive to heat stress in Brassica rapa

1 reference

https://pubmed.ncbi.nlm.nih.gov/27758893

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Cotranslational response to proteotoxic stress by elongation pausing of ribosomes

1 reference

https://pubmed.ncbi.nlm.nih.gov/27758893

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

An upstream open reading frame is essential for feedback regulation of ascorbate biosynthesis in Arabidopsis.

1 reference

https://pubmed.ncbi.nlm.nih.gov/27758893

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

XRN 5'→3' exoribonucleases: structure, mechanisms and functions.

1 reference

https://pubmed.ncbi.nlm.nih.gov/27758893

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Genome-wide high-resolution mapping of exosome substrates reveals hidden features in the Arabidopsis transcriptome.

1 reference

https://pubmed.ncbi.nlm.nih.gov/27758893

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

A microRNA as a translational repressor of APETALA2 in Arabidopsis flower development

1 reference

https://pubmed.ncbi.nlm.nih.gov/27758893

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Heat-induced ribosome pausing triggers mRNA co-translational decay in Arabidopsis thaliana.

1 reference

https://pubmed.ncbi.nlm.nih.gov/27758893

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Arabidopsis suppressor mutant of abh1 shows a new face of the already known players: ABH1 (CBP80) and ABI4-in response to ABA and abiotic stresses during seed germination.

1 reference

https://pubmed.ncbi.nlm.nih.gov/27758893

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

An mRNA cap binding protein, ABH1, modulates early abscisic acid signal transduction in Arabidopsis

1 reference

https://pubmed.ncbi.nlm.nih.gov/27758893

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

AtXRN4 degrades mRNA in Arabidopsis and its substrates include selected miRNA targets

1 reference

https://pubmed.ncbi.nlm.nih.gov/27758893

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The highways and byways of mRNA decay

1 reference

https://pubmed.ncbi.nlm.nih.gov/27758893

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The microRNA regulated SBP-box genes SPL9 and SPL15 control shoot maturation in Arabidopsis

1 reference

https://pubmed.ncbi.nlm.nih.gov/27758893

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

XRN4 and LARP1 are required for a heat-triggered mRNA decay pathway involved in plant acclimation and survival during thermal stress.

1 reference

https://pubmed.ncbi.nlm.nih.gov/27758893

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1105/TPC.16.00456

1 reference

Europe PubMed Central

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27758893%20AND%20SRC:MED&resulttype=core&format=json

25 March 2020

0 references

1 reference

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27758893%20AND%20SRC:MED&resulttype=core&format=json

25 March 2020

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