The exosome and RNA quality control in the nucleus (Q24681595)

RNA channelling by the archaeal exosome

Europe PubMed Central

title

The exosome and RNA quality control in the nucleus (English)

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Stepanka Vanacova

1

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author name string

Richard Stefl

series ordinal

2

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language of work or name

English

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publication date

July 2007

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published in

EMBO Reports

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volume

8

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issue

7

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page(s)

651-7

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cites work

1 reference

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Reconstitution, activities, and structure of the eukaryotic RNA exosome

7 April 2017

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Sequence-specific RNA binding mediated by the RNase PH domain of components of the exosome

7 April 2017

1 reference

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A new yeast poly(A) polymerase complex involved in RNA quality control

7 April 2017

1 reference

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AU binding proteins recruit the exosome to degrade ARE-containing mRNAs

7 April 2017

1 reference

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Yeast exosome mutants accumulate 3'-extended polyadenylated forms of U4 small nuclear RNA and small nucleolar RNAs

7 April 2017

1 reference

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Functions of the exosome in rRNA, snoRNA and snRNA synthesis

7 April 2017

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Structural and biochemical characterization of the yeast exosome component Rrp40

7 April 2017

1 reference

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Probing the Functional Importance of the Hexameric Ring Structure of RNase PH

7 April 2017

1 reference

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A duplicated fold is the structural basis for polynucleotide phosphorylase catalytic activity, processivity, and regulation

7 April 2017

1 reference

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A single subunit, Dis3, is essentially responsible for yeast exosome core activity

7 April 2017

1 reference

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Subunit architecture of multimeric complexes isolated directly from cells

7 April 2017

1 reference

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Surveillance of nuclear-restricted pre-ribosomes within a subnucleolar region of Saccharomyces cerevisiae

7 April 2017

1 reference

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Nuclear RNA surveillance in Saccharomyces cerevisiae: Trf4p-dependent polyadenylation of nascent hypomethylated tRNA and an aberrant form of 5S rRNA.

7 April 2017

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Nrd1 interacts with the nuclear exosome for 3' processing of RNA polymerase II transcripts

7 April 2017

1 reference

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Yeast Trf5p is a nuclear poly(A) polymerase

7 April 2017

1 reference

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Contributions of Trf4p- and Trf5p-dependent polyadenylation to the processing and degradative functions of the yeast nuclear exosome

7 April 2017

1 reference

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Cryptic pol II transcripts are degraded by a nuclear quality control pathway involving a new poly(A) polymerase

7 April 2017

1 reference

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RNA degradation by the exosome is promoted by a nuclear polyadenylation complex

7 April 2017

1 reference

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Polyadenylation of rRNA in Saccharomyces cerevisiae.

7 April 2017

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Nuclear surveillance and degradation of hypomodified initiator tRNAMet in S. cerevisiae

7 April 2017

1 reference

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Rrp47p is an exosome-associated protein required for the 3' processing of stable RNAs.

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1905902

Interactions between mRNA export commitment, 3'-end quality control, and nuclear degradation

7 April 2017

1 reference

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Quality control of mRNA 3'-end processing is linked to the nuclear exosome

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1905902

RNA-binding protein Nrd1 directs poly(A)-independent 3'-end formation of RNA polymerase II transcripts

7 April 2017

1 reference

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Identification of a regulated pathway for nuclear pre-mRNA turnover.

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1905902

A yeast heterogeneous nuclear ribonucleoprotein complex associated with RNA polymerase II

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1905902

Control of pre-mRNA accumulation by the essential yeast protein Nrd1 requires high-affinity transcript binding and a domain implicated in RNA polymerase II association

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1905902

Dob1p (Mtr4p) is a putative ATP-dependent RNA helicase required for the 3' end formation of 5.8S rRNA in Saccharomyces cerevisiae

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1905902

The exosome: a conserved eukaryotic RNA processing complex containing multiple 3'-->5' exoribonucleases

7 April 2017

1 reference

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The highways and byways of mRNA decay

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1905902

Characterization of native and reconstituted exosome complexes from the hyperthermophilic archaeon Sulfolobus solfataricus

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1905902

RNA-quality control by the exosome

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1905902

Structural basis of 3' end RNA recognition and exoribonucleolytic cleavage by an exosome RNase PH core

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1905902

The archaeal exosome core is a hexameric ring structure with three catalytic subunits

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1905902

A high-resolution map of transcription in the yeast genome

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1905902

Depletion of the yeast nuclear exosome subunit Rrp6 results in accumulation of polyadenylated RNAs in a discrete domain within the nucleolus

9 May 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1905902

A link between transcription and mRNP quality in Saccharomyces cerevisiae.

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1905902

Structure of the nuclear exosome component Rrp6p reveals an interplay between the active site and the HRDC domain

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1905902

Mutant LYS2 mRNAs retained and degraded in the nucleus of Saccharomyces cerevisiae

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1905902

Accumulation of unstable promoter-associated transcripts upon loss of the nuclear exosome subunit Rrp6p in Saccharomyces cerevisiae

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1905902

Process or perish: quality control in mRNA biogenesis

28 September 2017

1 reference

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Genome-wide mRNA surveillance is coupled to mRNA export

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1905902

Identification of cis elements directing termination of yeast nonpolyadenylated snoRNA transcripts

28 September 2017

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Localization of nuclear retained mRNAs in Saccharomyces cerevisiae

28 September 2017

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Degradation of normal mRNA in the nucleus of Saccharomyces cerevisiae

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1905902

Early formation of mRNP: license for export or quality control?

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1905902

The RNA processing exosome is linked to elongating RNA polymerase II in Drosophila

28 September 2017

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1905902

The exosome: a proteasome for RNA?

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1905902

Repression of gene expression by an exogenous sequence element acting in concert with a heterogeneous nuclear ribonucleoprotein-like protein, Nrd1, and the putative helicase Sen1

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1905902

Processing of 3'-extended read-through transcripts by the exosome can generate functional mRNAs.

28 September 2017

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Crossref

https://api.crossref.org/works/10.1038%2FSJ.EMBOR.7401005

Structural framework for the mechanism of archaeal exosomes in RNA processing

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PubMed

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inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1038/SJ.EMBOR.7401005

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Fatcat ID

release_g33qsahxt5gm3f7okn5o5x2ac4

1 reference

Fatcat

https://api.fatcat.wiki/v0/release/g33qsahxt5gm3f7okn5o5x2ac4