PROSPERous: high-throughput prediction of substrate cleavage sites for 90 proteases with improved accuracy. (Q47605405)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29069280%20AND%20SRC:MED&resulttype=core&format=json

8 April 2020

title

PROSPERous: high-throughput prediction of substrate cleavage sites for 90 proteases with improved accuracy (English)

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8 April 2020

1

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8 April 2020

Fuyi Li

2

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29069280%20AND%20SRC:MED&resulttype=core&format=json

8 April 2020

André Leier

3

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8 April 2020

Geoff Webb

8

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8 April 2020

author name string

Tatiana T Marquez-Lago

4

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8 April 2020

Gholamreza Haffari

6

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8 April 2020

Robert N Pike

9

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8 April 2020

Tatsuya Akutsu

5

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8 April 2020

Kuo-Chen Chou

7

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8 April 2020

John Hancock

10

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8 April 2020

language of work or name

English

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publication date

1 February 2018

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29069280%20AND%20SRC:MED&resulttype=core&format=json

8 April 2020

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8 April 2020

volume

34

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8 April 2020

issue

4

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8 April 2020

page(s)

684-687

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Twenty years of the MEROPS database of proteolytic enzymes, their substrates and inhibitors.

8 April 2020

cites work

1 reference

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Cascleave 2.0, a new approach for predicting caspase and granzyme cleavage targets.

29 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5860617

PROSPER: an integrated feature-based tool for predicting protease substrate cleavage sites

29 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5860617

CD-HIT: accelerated for clustering the next-generation sequencing data

29 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5860617

A review of statistical methods for prediction of proteolytic cleavage

29 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5860617

Bioinformatic approaches for predicting substrates of proteases

29 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5860617

Pripper: prediction of caspase cleavage sites from whole proteomes

29 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5860617

Cascleave: towards more accurate prediction of caspase substrate cleavage sites

29 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5860617

SitePredicting the cleavage of proteinase substrates.

29 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5860617

Identification of proteases and their types

29 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5860617

ProtIdent: a web server for identifying proteases and their types by fusing functional domain and sequential evolution information

29 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5860617

Global mapping of the topography and magnitude of proteolytic events in apoptosis

29 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5860617

Global sequencing of proteolytic cleavage sites in apoptosis by specific labeling of protein N termini

29 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5860617

Proteome-derived, database-searchable peptide libraries for identifying protease cleavage sites

29 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5860617

HIVcleave: a web-server for predicting human immunodeficiency virus protease cleavage sites in proteins

29 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5860617

In search of partners: linking extracellular proteases to substrates

29 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5860617

Targeting proteases: successes, failures and future prospects

29 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5860617

PoPS: a computational tool for modeling and predicting protease specificity.

29 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5860617

GraBCas: a bioinformatics tool for score-based prediction of Caspase- and Granzyme B-cleavage sites in protein sequences

29 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5860617

CaSPredictor: a new computer-based tool for caspase substrate prediction.

29 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5860617

ExPASy: The proteomics server for in-depth protein knowledge and analysis

29 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5860617

Prediction of human immunodeficiency virus protease cleavage sites in proteins

29 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5860617

Predicting human immunodeficiency virus protease cleavage sites in proteins by a discriminant function method

29 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5860617

Emerging roles of proteases in tumour suppression

29 September 2018

1 reference

Crossref

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTX670

10.1093/BIOINFORMATICS/BTX670

21 January 2018

Identifiers

DOI

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29069280%20AND%20SRC:MED&resulttype=core&format=json

journals/bioinformatics/SongLLMAHCWP18

8 April 2020

DBLP publication ID

1 reference

DBLP Dataset 2021-01-02

28 January 2021

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29069280%20AND%20SRC:MED&resulttype=core&format=json

8 April 2020

1 reference