Cascleave: towards more accurate prediction of caspase substrate cleavage sites (Q43174713)

15 November 2017

Cascleave: towards more accurate prediction of caspase substrate cleavage sites (English)

1 reference

15 November 2017

Sarah E Boyd

5

0 references

Geoff Webb

Geoffrey I Webb

6

0 references

James C Whisstock

James C Whisstock

8

0 references

Khalid Mahmood

Khalid Mahmood

4

0 references

Jiangning Song

Jiangning Song

1

0 references

Tatsuya Akutsu

7

Tatsuya Akutsu

1 reference

15 November 2017

Hao Tan

2

1 reference

PubMed ID

20130033

15 November 2017

Hongbin Shen

3

1 reference

PubMed ID

20130033

15 November 2017

language of work or name

English

0 references

publication date

3 February 2010

1 reference

15 November 2017

1 reference

15 November 2017

26

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15 November 2017

6

1 reference

15 November 2017

752-760

1 reference

Prediction of guide strand of microRNAs from its sequence and secondary structure

15 November 2017

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTQ043

GraBCas: a bioinformatics tool for score-based prediction of Caspase- and Granzyme B-cleavage sites in protein sequences

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTQ043

The SWISS-PROT protein sequence database and its supplement TrEMBL in 2000.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTQ043

Identification of apoptosis-associated proteins in a human Burkitt lymphoma cell line. Cleavage of heterogeneous nuclear ribonucleoprotein A1 by caspase 3.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTQ043

Identification of novel DNA repair proteins via primary sequence, secondary structure, and homology

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTQ043

SCRATCH: a protein structure and structural feature prediction server

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTQ043

Caspase-14 reveals its secrets

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTQ043

Global mapping of the topography and magnitude of proteolytic events in apoptosis

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTQ043

A caspase-activated DNase that degrades DNA during apoptosis, and its inhibitor ICAD

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTQ043

Identification of proteolytic cleavage sites by quantitative proteomics

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTQ043

The Pfam protein families database

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTQ043

Many cuts to ruin: a comprehensive update of caspase substrates

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTQ043

CaSPredictor: a new computer-based tool for caspase substrate prediction.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTQ043

Protein Identification and Analysis Tools on the ExPASy Server

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTQ043

Protein secondary structure prediction based on position-specific scoring matrices

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTQ043

Proteome-wide identification of family member-specific natural substrate repertoire of caspases

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTQ043

CyclinPred: a SVM-based method for predicting cyclin protein sequences.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTQ043

Prediction of nuclear proteins using SVM and HMM models

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTQ043

Quantitative prediction of mouse class I MHC peptide binding affinity using support vector machine regression (SVR) models

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTQ043

Toward computer-based cleavage site prediction of cysteine endopeptidases

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTQ043

The CASBAH: a searchable database of caspase substrates

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTQ043

Global sequencing of proteolytic cleavage sites in apoptosis by specific labeling of protein N termini

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTQ043

Comparison of the predicted and observed secondary structure of T4 phage lysozyme

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTQ043

Caspase structure, proteolytic substrates, and function during apoptotic cell death

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTQ043

Human caspases: activation, specificity, and regulation

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTQ043

Correlation and prediction of gene expression level from amino acid and dipeptide composition of its protein

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTQ043

Cleavage of CAD inhibitor in CAD activation and DNA degradation during apoptosis

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTQ043

Proteome-derived, database-searchable peptide libraries for identifying protease cleavage sites

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTQ043

Sequence logos: a new way to display consensus sequences

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTQ043

Computational identification of protein methylation sites through bi-profile Bayes feature extraction

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTQ043

Predicting protein-protein interactions based only on sequences information

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTQ043

Predicting residue-wise contact orders in proteins by support vector regression

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTQ043

Prediction of cis/trans isomerization in proteins using PSI-BLAST profiles and secondary structure information.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTQ043

Predicting disulfide connectivity from protein sequence using multiple sequence feature vectors and secondary structure.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTQ043

HSEpred: predict half-sphere exposure from protein sequences

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTQ043

Prodepth: predict residue depth by support vector regression approach from protein sequences only

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTQ043

The Ced-3/interleukin 1beta converting enzyme-like homolog Mch6 and the lamin-cleaving enzyme Mch2alpha are substrates for the apoptotic mediator CPP32

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTQ043

Subcellular location prediction of proteins using support vector machines with alignment of block sequences utilizing amino acid composition

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTQ043

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTQ043

Structural and kinetic determinants of protease substrates

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTQ043

SVRMHC prediction server for MHC-binding peptides

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTQ043

Prediction and Functional Analysis of Native Disorder in Proteins from the Three Kingdoms of Life

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTQ043

SVM-based prediction of caspase substrate cleavage sites

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTQ043

CASVM: web server for SVM-based prediction of caspase substrates cleavage sites

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTQ043

A multi-factor model for caspase degradome prediction

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTQ043

Antiapoptotic signaling generated by caspase-induced cleavage of RasGAP.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTQ043

Prediction of caspase cleavage sites using Bayesian bio-basis function neural networks.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTQ043

Better prediction of protein contact number using a support vector regression analysis of amino acid sequence

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTQ043

10.1093/BIOINFORMATICS/BTQ043

21 January 2018

Identifiers

DOI

1 reference

journals/bioinformatics/SongTSMBWAW10

15 November 2017

1 reference

DBLP Dataset 2021-01-02

28 January 2021

1 reference

PubMed ID

20130033