Key roles for freshwater Actinobacteria revealed by deep metagenomic sequencing (Q44531168)

3 December 2017

Key roles for freshwater Actinobacteria revealed by deep metagenomic sequencing (English)

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3 December 2017

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Carolina Megumi Mizuno

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Francisco Rodriguez-Valera

3 December 2017

Antonio Camacho

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Rohit Ghai

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Rohit Ghai

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1

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5

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Francisco Rodriguez-Valera

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3 December 2017

Antonio Picazo

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3 December 2017

21 November 2014

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3 December 2017

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3 December 2017

23

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3 December 2017

24

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3 December 2017

6073-6090

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Genome sequences of rare, uncultured bacteria obtained by differential coverage binning of multiple metagenomes

3 December 2017

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Gapped BLAST and PSI-BLAST: a new generation of protein database search programs

21 January 2018

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The RAST Server: rapid annotations using subsystems technology

21 January 2018

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Efficient aquatic bacterial metabolism of dissolved low-molecular-weight compounds from terrestrial sources

21 January 2018

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European Union bans atrazine, while the United States negotiates continued use.

21 January 2018

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21 January 2018

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Using light scatter signal to estimate bacterial biovolume by flow cytometry.

21 January 2018

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Exploring bacterial lignin degradation

21 January 2018

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Symbiotic digestion of lignocellulose in termite guts

21 January 2018

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Key aromatic-ring-cleaving enzyme, protocatechuate 3,4-dioxygenase, in the ecologically important marine Roseobacter lineage

21 January 2018

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The emerging role for bacteria in lignin degradation and bio-product formation.

21 January 2018

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trimAl: a tool for automated alignment trimming in large-scale phylogenetic analyses

21 January 2018

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The Ribosomal Database Project: improved alignments and new tools for rRNA analysis

21 January 2018

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MUSCLE: multiple sequence alignment with high accuracy and high throughput

21 January 2018

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Search and clustering orders of magnitude faster than BLAST

21 January 2018

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Productivity and salinity structuring of the microplankton revealed by comparative freshwater metagenomics

21 January 2018

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Alkanesulfonate degradation by novel strains of Achromobacter xylosoxidans, Tsukamurella wratislaviensis and Rhodococcus sp., and evidence for an ethanesulfonate monooxygenase in A. xylosoxidans strain AE4.

21 January 2018

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Cloning, sequencing, and expression of the Pseudomonas putida protocatechuate 3,4-dioxygenase genes

21 January 2018

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Complete genome sequence of Ilumatobacter coccineum YM16-304(T.).

21 January 2018

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Metabolic potential of a single cell belonging to one of the most abundant lineages in freshwater bacterioplankton

21 January 2018

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Successful enrichment of the ubiquitous freshwater acI Actinobacteria

21 January 2018

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Metagenome of the Mediterranean deep chlorophyll maximum studied by direct and fosmid library 454 pyrosequencing

21 January 2018

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New abundant microbial groups in aquatic hypersaline environments

21 January 2018

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Metagenomics of the water column in the pristine upper course of the Amazon river

21 January 2018

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Metagenomes of Mediterranean Coastal Lagoons

21 January 2018

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Breaking a paradigm: cosmopolitan and abundant freshwater actinobacteria are low GC.

21 January 2018

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Metagenomics uncovers a new group of low GC and ultra-small marine Actinobacteria

21 January 2018

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Comparative single-cell genomics reveals potential ecological niches for the freshwater acI Actinobacteria lineage

21 January 2018

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Comparative 16S rRNA analysis of lake bacterioplankton reveals globally distributed phylogenetic clusters including an abundant group of actinobacteria

21 January 2018

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Structural insights into the proton pumping by unusual proteorhodopsin from nonmarine bacteria

21 January 2018

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TIGRFAMs: a protein family resource for the functional identification of proteins

21 January 2018

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Isolation of strains belonging to the cosmopolitan Polynucleobacter necessarius cluster from freshwater habitats located in three climatic zones

21 January 2018

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Description of seven candidate species affiliated with the phylum Actinobacteria, representing planktonic freshwater bacteria

21 January 2018

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Isolation of novel ultramicrobacteria classified as actinobacteria from five freshwater habitats in Europe and Asia

21 January 2018

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The filtration-acclimatization method for isolation of an important fraction of the not readily cultivable bacteria

21 January 2018

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Rhodoluna lacicola gen. nov., sp. nov., a planktonic freshwater bacterium with stream-lined genome

21 January 2018

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Oxidative mechanisms involved in lignin degradation by white-rot fungi.

21 January 2018

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Identification of ribosomal RNA genes in metagenomic fragments

21 January 2018

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Prodigal: prokaryotic gene recognition and translation initiation site identification

21 January 2018

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'Candidatus Planktophila limnetica', an actinobacterium representing one of the most numerically important taxa in freshwater bacterioplankton

21 January 2018

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Summer heatwaves promote blooms of harmful cyanobacteria

21 January 2018

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Genome sequence of "Candidatus Aquiluna" sp. strain IMCC13023, a marine member of the Actinobacteria isolated from an arctic fjord

21 January 2018

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Deciphering the genome of polyphosphate accumulating actinobacterium Microlunatus phosphovorus

21 January 2018

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Microbial metabolism of methanesulfonic acid

21 January 2018

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Distribution, diversity and ecology of aerobic CO-oxidizing bacteria

21 January 2018

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Kalign--an accurate and fast multiple sequence alignment algorithm

21 January 2018

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The genomic basis of trophic strategy in marine bacteria

21 January 2018

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tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence

21 January 2018

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CO dehydrogenase genes found in metagenomic fosmid clones from the deep mediterranean sea.

21 January 2018

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New insights into Escherichia coli metabolism: carbon scavenging, acetate metabolism and carbon recycling responses during growth on glycerol

21 January 2018

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Ilumatobacter fluminis gen. nov., sp. nov., a novel actinobacterium isolated from the sediment of an estuary

21 January 2018

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Genome sequence of Silicibacter pomeroyi reveals adaptations to the marine environment

21 January 2018

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Fermentative utilization of glycerol by Escherichia coli and its implications for the production of fuels and chemicals

21 January 2018

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Phylogenetic ecology of the freshwater Actinobacteria acI lineage

21 January 2018

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A guide to the natural history of freshwater lake bacteria

21 January 2018

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Molecular cloning of the protocatechuate 4,5-dioxygenase genes of Pseudomonas paucimobilis

21 January 2018

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Metagenomic insights into the evolution, function, and complexity of the planktonic microbial community of Lake Lanier, a temperate freshwater ecosystem

21 January 2018

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Climate change: a catalyst for global expansion of harmful cyanobacterial blooms

21 January 2018

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IDBA-UD: a de novo assembler for single-cell and metagenomic sequencing data with highly uneven depth

21 January 2018

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FastTree 2--approximately maximum-likelihood trees for large alignments

21 January 2018

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EMBOSS: the European Molecular Biology Open Software Suite

21 January 2018

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Insights into the phylogeny and coding potential of microbial dark matter

21 January 2018

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The Sorcerer II Global Ocean Sampling expedition: northwest Atlantic through eastern tropical Pacific

21 January 2018

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Lignocellulosic residues: biodegradation and bioconversion by fungi.

21 January 2018

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An improved protocol for quantification of freshwater Actinobacteria by fluorescence in situ hybridization

21 January 2018

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Microbial rhodopsins: functional versatility and genetic mobility

21 January 2018

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Actinorhodopsin genes discovered in diverse freshwater habitats and among cultivated freshwater Actinobacteria.

21 January 2018

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The COG database: new developments in phylogenetic classification of proteins from complete genomes

21 January 2018

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Inositol phosphates in the environment

21 January 2018

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Purification and characterization of protocatechuate 2,3-dioxygenase from Bacillus macerans: a new extradiol catecholic dioxygenase

21 January 2018

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Within- and between-lake variability in the composition of bacterioplankton communities: investigations using multiple spatial scales.

21 January 2018

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Typical freshwater bacteria: an analysis of available 16S rRNA gene sequences from plankton of lakes and rivers

21 January 2018

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21 January 2018

Identifiers

DOI

10.1111/MEC.12985

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3 December 2017

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PubMed ID

25355242