tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence (Q24544402)

1 May 2017

4 May 2017

author name string

T M Lowe

1

0 references

S R Eddy

2

0 references

T. M. Lowe

1

1 reference

4 May 2017

S. R. Eddy

2

1 reference

4 May 2017

language of work or name

English

0 references

publication date

1 March 1997

2 references

1 May 2017

4 May 2017

published in

Nucleic Acids Research

2 references

1 May 2017

4 May 2017

volume

25

2 references

1 May 2017

4 May 2017

page(s)

955-964

2 references

1 May 2017

4 May 2017

issue

5

2 references

1 May 2017

RNA sequence analysis using covariance models

4 May 2017

cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=146525

Improved tools for biological sequence comparison

24 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=146525

Basic local alignment search tool

24 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=146525

Complete Genome Sequence of the Methanogenic Archaeon, Methanococcus jannaschii

24 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=146525

Whole-genome random sequencing and assembly of Haemophilus influenzae Rd

24 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=146525

The Minimal Gene Complement of Mycoplasma genitalium

24 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=146525

dbEST--database for "expressed sequence tags"

24 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=146525

Hidden Markov models in computational biology. Applications to protein modeling

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=146525

Palingol: a declarative programming language to describe nucleic acids' secondary structures and to scan sequence database.

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=146525

Staphylococcus aureus has clustered tRNA genes

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=146525

The isochore organization of the human genome and its evolutionary history--a review

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=146525

Identification of new eukaryotic tRNA genes in genomic DNA databases by a multistep weight matrix analysis of transcriptional control regions.

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=146525

Stochastic context-free grammars for tRNA modeling

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=146525

Compilation of tRNA sequences and sequences of tRNA genes

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=146525

Multiple molecular determinants for retrotransposition in a primer tRNA

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=146525

A computer program to search for tRNA genes.

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=146525

Repeat sequence families derived from mammalian tRNA genes

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=146525

A program for the identification of tRNA-like structures in DNA sequence data

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=146525

Methods to define and locate patterns of motifs in sequences

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=146525

CGG: an unassigned or nonsense codon in Mycoplasma capricolum

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=146525

Matching relational patterns in nucleic acid sequences.

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=146525

IBM microcomputer programs that analyze DNA sequences for tRNA genes.

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=146525

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=146525

Searching for tRNA genes in DNA sequences--an IBM microcomputer program.

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=146525

Identifying potential tRNA genes in genomic DNA sequences.

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=146525

Pattern searching/alignment with RNA primary and secondary structures: an effective descriptor for tRNA

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=146525

Overseer: a nucleotide sequence searching tool

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=146525

RNA modeling using Gibbs sampling and stochastic context free grammars.

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=146525

Finding the hairpin in the haystack: searching for RNA motifs.

29 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=146525

An RNA pattern matching program with enhanced performance and portability.

29 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=146525

Automatic identification of group I intron cores in genomic DNA sequences.

29 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=146525

Unassigned or nonsense codons in Micrococcus luteus

29 November 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/9023104

12 December 2020

inferred from PubMed ID database lookup

Proportion of HeLa cell genome complementary to transfer RNA and 5 s RNA

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/9023104

12 December 2020

inferred from PubMed ID database lookup

A microcomputer program for the identification of tRNA genes

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/9023104

12 December 2020

inferred from PubMed ID database lookup

A new computer method for the storage and manipulation of DNA gel reading data

1 reference

Crossref

https://api.crossref.org/works/10.1093%2FNAR%2F25.5.0955

7 January 2021

inferred from DOI database lookup

Identifiers

DOI

10.1093/NAR/25.5.955

1 reference

25690

10.1093/NAR/25.5.0955

2 references

533655

4 May 2017

25690

1 reference

25690

533655

1 reference

1 reference

1 reference