Comparative single-cell genomics reveals potential ecological niches for the freshwater acI Actinobacteria lineage (Q34662029)

3 August 2017

Comparative single-cell genomics reveals potential ecological niches for the freshwater acI Actinobacteria lineage (English)

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3 August 2017

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Ramunas Stepanauskas

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Tanja Woyke

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Tanja Woyke

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Alexander Sczyrba

11

Alexander Sczyrba

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Patrick Schwientek

5

Patrick Schwientek

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Manuel Martínez-García

Manuel Martinez-Garcia

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Katherine D. McMahon

Katherine D McMahon

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Stefan Bertilsson

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Stefan Bertilsson

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Katrina T Forest

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Hans-Peter Grossart

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Falk Warnecke

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3 August 2017

Trevor W Ghylin

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3 August 2017

Sarahi L Garcia

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3 August 2017

Francisco Moya

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Ben O Oyserman

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3 August 2017

James Mutschler

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Jeffrey Dwulit-Smith

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Leong-Keat Chan

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5 August 2014

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inferred from page(s)

published in

The ISME Journal

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3 August 2017

8

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12

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2503-2516

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maintained by WikiProject

3 August 2017

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https://scigraph.springernature.com/pub.10.1038/ismej.2014.135

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Metagenomics of the water column in the pristine upper course of the Amazon river

7 July 2018

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High-throughput single-cell sequencing identifies photoheterotrophs and chemoautotrophs in freshwater bacterioplankton.

7 July 2018

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Energy starved Candidatus Pelagibacter ubique substitutes light-mediated ATP production for endogenous carbon respiration

7 July 2018

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7 July 2018

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7 July 2018

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Reconstitution of gloeobacter rhodopsin with echinenone: role of the 4-keto group

7 July 2018

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The light-driven proton pump proteorhodopsin enhances bacterial survival during tough times

7 July 2018

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Proteorhodopsin phototrophy promotes survival of marine bacteria during starvation

7 July 2018

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7 July 2018

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Transporter genes expressed by coastal bacterioplankton in response to dissolved organic carbon

7 July 2018

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Reconstitution of Gloeobacter violaceus rhodopsin with a light-harvesting carotenoid antenna

7 July 2018

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Contrasting ability to take up leucine and thymidine among freshwater bacterial groups: implications for bacterial production measurements

7 July 2018

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Comparison of the structure and composition of bacterial communities from temperate and tropical freshwater ecosystems.

7 July 2018

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Assembling the marine metagenome, one cell at a time

7 July 2018

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Substrate incorporation patterns of bacterioplankton populations in stratified and mixed waters of a humic lake

7 July 2018

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Actinorhodopsin genes discovered in diverse freshwater habitats and among cultivated freshwater Actinobacteria.

7 July 2018

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The Transporter Classification Database: recent advances

7 July 2018

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Crystallographic structure of xanthorhodopsin, the light-driven proton pump with a dual chromophore

7 July 2018

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A rapid bootstrap algorithm for the RAxML Web servers

7 July 2018

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Genome analysis of the proteorhodopsin-containing marine bacterium Polaribacter sp. MED152 (Flavobacteria).

7 July 2018

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7 July 2018

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7 July 2018

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7 July 2018

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Prokaryotic taxonomy and phylogeny in the genomic era: advancements and challenges ahead

7 July 2018

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Phylogenetic ecology of the freshwater Actinobacteria acI lineage

7 July 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4260696

Bacterial community composition of a shallow hypertrophic freshwater lake in China, revealed by 16S rRNA gene sequences

7 July 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4260696

Proteorhodopsin photosystem gene expression enables photophosphorylation in a heterologous host

7 July 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4260696

Light stimulates growth of proteorhodopsin-containing marine Flavobacteria.

7 July 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4260696

Diversity and seasonal dynamics of Actinobacteria populations in four lakes in northeastern Germany

7 July 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4260696

Abundances, identity, and growth state of actinobacteria in mountain lakes of different UV transparency

7 July 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4260696

Codon usage bias from tRNA's point of view: redundancy, specialization, and efficient decoding for translation optimization

7 July 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4260696

ARB: a software environment for sequence data

7 July 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4260696

Isolation of cyanophycin-degrading bacteria, cloning and characterization of an extracellular cyanophycinase gene (cphE) from Pseudomonas anguilliseptica strain BI. The cphE gene from P. anguilliseptica BI encodes a cyanophycinhydrolyzing enzyme

7 July 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4260696

Evaluation of non-cyanobacterial genome sequences for occurrence of genes encoding proteins homologous to cyanophycin synthetase and cloning of an active cyanophycin synthetase from Acinetobacter sp. strain DSM 587

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4260696

Comparative 16S rRNA analysis of lake bacterioplankton reveals globally distributed phylogenetic clusters including an abundant group of actinobacteria

7 July 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4260696

Pathogenicity islands and the evolution of microbes

7 July 2018

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Cyanophycinase, a peptidase degrading the cyanobacterial reserve material multi-L-arginyl-poly-L-aspartic acid (cyanophycin): molecular cloning of the gene of Synechocystis sp. PCC 6803, expression in Escherichia coli, and biochemical characterizati

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4260696

Comparative genomics of the Archaea (Euryarchaeota): evolution of conserved protein families, the stable core, and the variable shell.

7 July 2018

1 reference

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The codon Adaptation Index--a measure of directional synonymous codon usage bias, and its potential applications

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4260696

Nutrient requirements for growth of the extreme oligotroph 'Candidatus Pelagibacter ubique' HTCC1062 on a defined medium

7 July 2018

1 reference

https://api.crossref.org/works/10.1038%2FISMEJ.2014.135

Characterization and a role of Pseudomonas aeruginosa spermidine dehydrogenase in polyamine catabolism.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FISMEJ.2014.135

Grazing resistant freshwater bacteria profit from chitin and cell-wall-derived organic carbon

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FISMEJ.2014.135

Analysis of genome sequences for genes of cyanophycin metabolism: identifying putative cyanophycin metabolizing prokaryotes.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FISMEJ.2014.135

Successful enrichment of the ubiquitous freshwater acI Actinobacteria

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FISMEJ.2014.135

Evidence for structuring of bacterial community composition by organic carbon source in temperate lakes

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FISMEJ.2014.135

Microbial community dynamics in a humic lake: differential persistence of common freshwater phylotypes.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FISMEJ.2014.135

Distribution of acI-Actinorhodopsin genes in Baltic Sea salinity gradients indicates adaptation of facultative freshwater photoheterotrophs to brackish waters.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FISMEJ.2014.135

Selenite and tellurite reduction by Shewanella oneidensis

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FISMEJ.2014.135

Environmental actinorhodopsin expression revealed by a new in situ filtration and fixation sampler.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FISMEJ.2014.135

Isolation and characterization of gram-positive cyanophycin-degrading bacteria-kinetic studies on cyanophycin depolymerase activity in aerobic bacteria

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/25093637

12 December 2020

inferred from PubMed ID database lookup

Actinorhodopsins: proteorhodopsin-like gene sequences found predominantly in non-marine environments

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/25093637

12 December 2020

inferred from PubMed ID database lookup

Rapid successions affect microbial N-acetyl-glucosamine uptake patterns during a lacustrine spring phytoplankton bloom

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/25093637

12 December 2020

inferred from PubMed ID database lookup

Identifiers

DOI

10.1038/ISMEJ.2014.135

1 reference

Dimensions Publication ID

3 August 2017

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1 reference

3 August 2017

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