Orientation-dependent regulation of integrated HIV-1 expression by host gene transcriptional readthrough. (Q43226911)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:18692773%20AND%20SRC:MED&resulttype=core&format=json

12 January 2020

title

Orientation-dependent regulation of integrated HIV-1 expression by host gene transcriptional readthrough (English)

1 reference

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12 January 2020

8

1 reference

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12 January 2020

Wenfeng An

3

1 reference

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12 January 2020

Hung-Chih Yang

5

1 reference

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12 January 2020

10

Robert F Siliciano

1 reference

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12 January 2020

9

Janet D Siliciano

1 reference

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12 January 2020

1

Yefei Han

1 reference

12 January 2020

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:18692773%20AND%20SRC:MED&resulttype=core&format=json

Yijie B Lin

2

1 reference

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12 January 2020

Jie Xu

4

1 reference

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12 January 2020

Karen O'Connell

6

1 reference

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12 January 2020

Dominic Dordai

7

1 reference

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12 January 2020

publication date

1 August 2008

1 reference

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12 January 2020

language of work or name

0 references

1 reference

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12 January 2020

volume

4

1 reference

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12 January 2020

issue

2

1 reference

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12 January 2020

page(s)

134-146

1 reference

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CBF-1 promotes transcriptional silencing during the establishment of HIV-1 latency

12 January 2020

cites work

1 reference

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cHS4 insulator-mediated alleviation of promoter interference during cell-based expression of tandemly associated transgenes.

25 May 2018

1 reference

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Cellular microRNAs contribute to HIV-1 latency in resting primary CD4+ T lymphocytes

25 May 2018

1 reference

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Noncoding transcription controls downstream promoters to regulate T-cell receptor alpha recombination

25 May 2018

1 reference

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Transcriptional interference: an unexpected layer of complexity in gene regulation

25 May 2018

1 reference

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c-Myc and Sp1 contribute to proviral latency by recruiting histone deacetylase 1 to the human immunodeficiency virus type 1 promoter

25 May 2018

1 reference

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A chromatin landmark and transcription initiation at most promoters in human cells

25 May 2018

1 reference

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Genome regulation by polycomb and trithorax proteins

25 May 2018

1 reference

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Suv39H1 and HP1gamma are responsible for chromatin-mediated HIV-1 transcriptional silencing and post-integration latency

25 May 2018

1 reference

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Recruitment of chromatin-modifying enzymes by CTIP2 promotes HIV-1 transcriptional silencing

25 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2604135

Repression of the human dihydrofolate reductase gene by a non-coding interfering transcript

25 May 2018

1 reference

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Expression of transgenes targeted to the Gt(ROSA)26Sor locus is orientation dependent

25 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2604135

Transcription of bxd noncoding RNAs promoted by trithorax represses Ubx in cis by transcriptional interference

25 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2604135

Antisense transcription controls cell fate in Saccharomyces cerevisiae

25 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2604135

Potential regulatory relationship between the nested gene DDC8 and its host gene tissue inhibitor of metalloproteinase-2

25 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2604135

Recruitment of TFIIH to the HIV LTR is a rate-limiting step in the emergence of HIV from latency

25 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2604135

Integration of human immunodeficiency virus type 1 in untreated infection occurs preferentially within genes

25 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2604135

Nuclear retention of multiply spliced HIV-1 RNA in resting CD4+ T cells

25 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2604135

NF-kappaB p50 promotes HIV latency through HDAC recruitment and repression of transcriptional initiation

25 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2604135

Transcriptional activation by bidirectional RNA polymerase II elongation over a silent promoter

25 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2604135

Transcriptional interference--a crash course

25 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2604135

Genome-wide analysis of chromosomal features repressing human immunodeficiency virus transcription.

25 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2604135

Kinetics of human immunodeficiency virus type 1 decay following entry into resting CD4+ T cells

25 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2604135

Autocatalytic RNA cleavage in the human beta-globin pre-mRNA promotes transcription termination

25 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2604135

Human 5' --> 3' exonuclease Xrn2 promotes transcription termination at co-transcriptional cleavage sites

25 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2604135

The multifactorial nature of HIV-1 latency

25 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2604135

Retroviral DNA integration: ASLV, HIV, and MLV show distinct target site preferences

25 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2604135

Analysis of human immunodeficiency virus type 1 transcriptional elongation in resting CD4+ T cells in vivo

25 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2604135

Transcriptional interference between convergent promoters caused by elongation over the promoter

25 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2604135

Resting CD4+ T cells from human immunodeficiency virus type 1 (HIV-1)-infected individuals carry integrated HIV-1 genomes within actively transcribed host genes

25 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2604135

The gene product Murr1 restricts HIV-1 replication in resting CD4+ lymphocytes

25 May 2018

1 reference

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Transcription through the roadblocks: the role of RNA polymerase cooperation

25 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2604135

Analysis of human immunodeficiency virus type 1 gene expression in latently infected resting CD4+ T lymphocytes in vivo

25 May 2018

1 reference

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HIV reproducibly establishes a latent infection after acute infection of T cells in vitro.

25 May 2018

1 reference

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HIV-1 integration in the human genome favors active genes and local hotspots

25 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2604135

Transcriptional collision between convergent genes in budding yeast.

25 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2604135

HIV preferentially infects HIV-specific CD4+ T cells

25 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2604135

Counterregulation of chromatin deacetylation and histone deacetylase occupancy at the integrated promoter of human immunodeficiency virus type 1 (HIV-1) by the HIV-1 repressor YY1 and HIV-1 activator Tat

25 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2604135

Integrating mRNA processing with transcription

25 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2604135

Transcriptional Interference by Independently Regulated Genes Occurs in Any Relative Arrangement of the Genes and Is Influenced by Chromosomal Integration Position

25 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2604135

Multiple transcript cleavage precedes polymerase release in termination by RNA polymerase II

25 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2604135

The site of HIV-1 integration in the human genome determines basal transcriptional activity and response to Tat transactivation

25 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2604135

Initial sequencing and analysis of the human genome

25 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2604135

Development of multigene and regulated lentivirus vectors

25 May 2018

1 reference

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Characterization of chemokine receptor utilization of viruses in the latent reservoir for human immunodeficiency virus type 1.

25 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2604135

The human factors YY1 and LSF repress the human immunodeficiency virus type 1 long terminal repeat via recruitment of histone deacetylase 1.

25 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2604135

Interspersed repeats and other mementos of transposable elements in mammalian genomes

25 May 2018

1 reference

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Latent infection of CD4+ T cells provides a mechanism for lifelong persistence of HIV-1, even in patients on effective combination therapy

25 May 2018

1 reference

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Distinct roles for CTD Ser-2 and Ser-5 phosphorylation in the recruitment and allosteric activation of mammalian mRNA capping enzyme

25 May 2018

1 reference

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Transcriptional interference perturbs the binding of Sp1 to the HIV-1 promoter.

25 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2604135

Identification of a Reservoir for HIV-1 in Patients on Highly Active Antiretroviral Therapy

25 May 2018

1 reference

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A controlled trial of two nucleoside analogues plus indinavir in persons with human immunodeficiency virus infection and CD4 cell counts of 200 per cubic millimeter or less. AIDS Clinical Trials Group 320 Study Team

25 May 2018

1 reference

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Decay characteristics of HIV-1-infected compartments during combination therapy

25 May 2018

1 reference

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Quantification of latent tissue reservoirs and total body viral load in HIV-1 infection

25 May 2018

1 reference

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Copy number and orientation determine the susceptibility of a gene to silencing by nearby heterochromatin in Drosophila

25 May 2018

1 reference

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Poly(A) signals and transcriptional pause sites combine to prevent interference between RNA polymerase II promoters.

25 May 2018

1 reference

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HIV-1 latency due to the site of proviral integration

25 May 2018

1 reference

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Chromatin disruption in the promoter of human immunodeficiency virus type 1 during transcriptional activation.

25 May 2018

1 reference

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Cellular latency in human immunodeficiency virus-infected individuals with high CD4 levels can be detected by the presence of promoter-proximal transcripts

25 May 2018

1 reference

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Tumour necrosis factor alpha and interleukin-1 beta induce specific subunits of NFKB to bind the HIV-1 enhancer: characterisation of transcription factors controlling human immunodeficiency virus type 1 gene expression in neural cells

25 May 2018

1 reference

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Lentivirus Tat proteins specifically associate with a cellular protein kinase, TAK, that hyperphosphorylates the carboxyl-terminal domain of the large subunit of RNA polymerase II: candidate for a Tat cofactor

25 May 2018

1 reference

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Promoter occlusion: Transcription through a promoter may inhibit its activity

25 May 2018

1 reference

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Human immunodeficiency virus long terminal repeat responds to T-cell activation signals

25 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2604135

An inducible transcription factor activates expression of human immunodeficiency virus in T cells

25 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2604135

Anti-termination of transcription within the long terminal repeat of HIV-1 by tat gene product

25 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2604135

The HIV-1 rev trans-activator acts through a structured target sequence to activate nuclear export of unspliced viral mRNA

25 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2604135

Tumor necrosis factor alpha activates human immunodeficiency virus type 1 through induction of nuclear factor binding to the NF-kappa B sites in the long terminal repeat

25 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2604135

Role of transcriptional interference in the Drosophila melanogaster Adh promoter switch

25 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2604135

HIV-1 entry into quiescent primary lymphocytes: molecular analysis reveals a labile, latent viral structure

25 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2604135

HIV-1 replication is controlled at the level of T cell activation and proviral integration

25 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2604135

Convergent transcription in bacteriophage λ: Interference with gene expression

25 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2604135

Non-coding RNA directed DNA demethylation of Sphk1 CpG island.

25 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2604135

Long-term follow-up studies confirm the stability of the latent reservoir for HIV-1 in resting CD4+ T cells

15 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2604135

A functional enhancer suppresses silencing of a transgene and prevents its localization close to centrometric heterochromatin

15 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2604135

Z/AP, a double reporter for cre-mediated recombination

15 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2604135

Treatment with indinavir, zidovudine, and lamivudine in adults with human immunodeficiency virus infection and prior antiretroviral therapy

15 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2604135

In vivo fate of HIV-1-infected T cells: quantitative analysis of the transition to stable latency

15 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2604135

Position and density effects on repression by stationary and mobile DNA-binding proteins

15 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2604135

Beta-globin YAC transgenes exhibit uniform expression levels but position effect variegation in mice

15 August 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/18692773

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

The same inducible nuclear proteins regulates mitogen activation of both the interleukin-2 receptor-alpha gene and type 1 HIV

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/18692773

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1016/J.CHOM.2008.06.008

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:18692773%20AND%20SRC:MED&resulttype=core&format=json

12 January 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:18692773%20AND%20SRC:MED&resulttype=core&format=json

12 January 2020

PubMed publication ID

18692773

1 reference