Genome-wide analysis of chromosomal features repressing human immunodeficiency virus transcription. (Q42755157)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:15890899%20AND%20SRC:MED&resulttype=core&format=json

11 January 2020

title

Genome-wide analysis of chromosomal features repressing human immunodeficiency virus transcription (English)

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11 January 2020

5

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11 January 2020

Eric Verdin

7

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11 January 2020

Joseph R. Ecker

9

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author name string

M K Lewinski

1

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11 January 2020

D Bisgrove

2

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11 January 2020

P Shinn

3

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11 January 2020

H Chen

4

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11 January 2020

S Hannenhalli

6

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11 January 2020

C C Berry

8

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F D Bushman

10

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11 January 2020

publication date

1 June 2005

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11 January 2020

language of work or name

0 references

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11 January 2020

volume

79

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11 January 2020

issue

11

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page(s)

6610-6619

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High-throughput mouse knockouts provide a functional analysis of the genome

11 January 2020

cites work

1 reference

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Retroviral DNA integration: ASLV, HIV, and MLV show distinct target site preferences

27 May 2018

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Small interfering RNA-induced transcriptional gene silencing in human cells

27 May 2018

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Intergenic transcription is required to repress the Saccharomyces cerevisiae SER3 gene

27 May 2018

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Transcriptional interference between convergent promoters caused by elongation over the promoter

27 May 2018

1 reference

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Resting CD4+ T cells from human immunodeficiency virus type 1 (HIV-1)-infected individuals carry integrated HIV-1 genomes within actively transcribed host genes

27 May 2018

1 reference

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Genome-wide localization of the nuclear transport machinery couples transcriptional status and nuclear organization

27 May 2018

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A gene atlas of the mouse and human protein-encoding transcriptomes

27 May 2018

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RNA interference against retroviruses

27 May 2018

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HIV-1 and the host cell: an intimate association

27 May 2018

1 reference

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Approaches for the sequence-specific knockdown of mRNA.

27 May 2018

1 reference

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Transcription start regions in the human genome are favored targets for MLV integration

27 May 2018

1 reference

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HIV reproducibly establishes a latent infection after acute infection of T cells in vitro.

27 May 2018

1 reference

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Considering nuclear compartmentalization in the light of nuclear dynamics

27 May 2018

1 reference

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HIV-1 Tat reprograms immature dendritic cells to express chemoattractants for activated T cells and macrophages

27 May 2018

1 reference

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HIV-1 integration in the human genome favors active genes and local hotspots

27 May 2018

1 reference

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Selection for short introns in highly expressed genes

27 May 2018

1 reference

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Trap a gene and find out its function: toward functional genomics in Drosophila

27 May 2018

1 reference

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Gene expression profile of HIV-1 Tat expressing cells: a close interplay between proliferative and differentiation signals

27 May 2018

1 reference

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RNA silencing: the genome's immune system

27 May 2018

1 reference

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The challenge of viral reservoirs in HIV-1 infection

27 May 2018

1 reference

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Translating the Histone Code

27 May 2018

1 reference

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Re-SET-ting heterochromatin by histone methyltransferases

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1112149

The site of HIV-1 integration in the human genome determines basal transcriptional activity and response to Tat transactivation

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1112149

The spatial organization of human chromosomes within the nuclei of normal and emerin-mutant cells.

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1112149

Balancing transcriptional interference and initiation on the GAL7 promoter of Saccharomyces cerevisiae

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1112149

Tat competes with CIITA for the binding to P-TEFb and blocks the expression of MHC class II genes in HIV infection

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1112149

HIV-1 Tat: coping with negative elongation factors

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1112149

HIV-1 regulatory/accessory genes: keys to unraveling viral and host cell biology

27 May 2018

1 reference

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Unfolding the mysteries of heterochromatin.

27 May 2018

1 reference

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Chromosome Structure and Human Immunodeficiency Virus Type 1 cDNA Integration: Centromeric Alphoid Repeats Are a Disfavored Target

27 May 2018

1 reference

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27 May 2018

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A Novel CDK9-Associated C-Type Cyclin Interacts Directly with HIV-1 Tat and Mediates Its High-Affinity, Loop-Specific Binding to TAR RNA

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1112149

Transcriptional interference perturbs the binding of Sp1 to the HIV-1 promoter.

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1112149

Histone acetyltransferases regulate HIV-1 enhancer activity in vitro

27 May 2018

1 reference

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Presence of an inducible HIV-1 latent reservoir during highly active antiretroviral therapy

27 May 2018

1 reference

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Identification of a Reservoir for HIV-1 in Patients on Highly Active Antiretroviral Therapy

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1112149

Recovery of Replication-Competent HIV Despite Prolonged Suppression of Plasma Viremia

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1112149

Sequence analysis of the human DNA flanking sites of human immunodeficiency virus type 1 integration

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1112149

In vivo gene delivery and stable transduction of nondividing cells by a lentiviral vector

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1112149

Transcriptional interference in avian retroviruses—implications for the promoter insertion model of leukaemogenesis

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1112149

Anti-termination of transcription within the long terminal repeat of HIV-1 by tat gene product

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1112149

DNase I-hypersensitive sites are associated with both long terminal repeats and with the intragenic enhancer of integrated human immunodeficiency virus type 1

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1112149

Cloning of an NF-kappa B subunit which stimulates HIV transcription in synergy with p65

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1112149

Interaction in vivo between strong closely spaced constitutive promoters

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1112149

Target-sequence preferences of HIV-1 integration complexes in vitro

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1112149

The structure and evolution of centromeric transition regions within the human genome

16 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1112149

A transferrin receptor antibody represents one signal for the induction of IL 2 production by a human T cell line

1 December 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/15890899

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1128/JVI.79.11.6610-6619.2005

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:15890899%20AND%20SRC:MED&resulttype=core&format=json

11 January 2020

1 reference

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11 January 2020

PubMed publication ID

15890899

1 reference