Improved binding site assignment by high-resolution mapping of RNA-protein interactions using iCLIP (Q42557646)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26260686%20AND%20SRC:MED&resulttype=core&format=json

22 February 2020

title

Improved binding site assignment by high-resolution mapping of RNA-protein interactions using iCLIP (English)

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22 February 2020

3

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22 February 2020

Wolfgang Huber

9

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22 February 2020

Matthias Hentze

10

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22 February 2020

Tomaž Curk

2

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22 February 2020

Ina Hollerer

7

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22 February 2020

5

Anne-Marie Alleaume

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22 February 2020

8

Madhuri Bhuvanagiri

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22 February 2020

11

Andreas E Kulozik

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22 February 2020

6

Jana Sieber

1 reference

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22 February 2020

4

Thomas Schwarzl

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22 February 2020

author name string

Christian Hauer

1

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22 February 2020

language of work or name

English

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publication date

11 August 2015

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22 February 2020

published in

Nature Communications

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22 February 2020

volume

6

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22 February 2020

page(s)

7921

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Creative Commons Attribution 4.0 International

22 February 2020

copyright license

start time

11 August 2015

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

exact match

https://scigraph.springernature.com/pub.10.1038/ncomms8921

0 references

cites work

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HITS-CLIP and integrative modeling define the Rbfox splicing-regulatory network linked to brain development and autism

28 May 2018

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Crosslinking-immunoprecipitation (iCLIP) analysis reveals global regulatory roles of hnRNP L.

28 May 2018

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De novo prediction of PTBP1 binding and splicing targets reveals unexpected features of its RNA recognition and function

28 May 2018

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28 May 2018

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Mapping Argonaute and conventional RNA-binding protein interactions with RNA at single-nucleotide resolution using HITS-CLIP and CIMS analysis

28 May 2018

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dCLIP: a computational approach for comparative CLIP-seq analyses

28 May 2018

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iCLIP: protein-RNA interactions at nucleotide resolution

28 May 2018

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TopHat2: accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions

28 May 2018

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Direct competition between hnRNP C and U2AF65 protects the transcriptome from the exonization of Alu elements

28 May 2018

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CLIP (Cross-Linking and Immunoprecipitation) Identification of RNAs Bound by a Specific Protein

28 May 2018

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28 May 2018

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The cellular EJC interactome reveals higher-order mRNP structure and an EJC-SR protein nexus

28 May 2018

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Analysis of CLIP and iCLIP methods for nucleotide-resolution studies of protein-RNA interactions

28 May 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4918375

The RNA-binding landscapes of two SR proteins reveal unique functions and binding to diverse RNA classes.

28 May 2018

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HITS-CLIP: panoramic views of protein-RNA regulation in living cells

28 May 2018

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Mapping in vivo protein-RNA interactions at single-nucleotide resolution from HITS-CLIP data

28 May 2018

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iCLIP predicts the dual splicing effects of TIA-RNA interactions.

28 May 2018

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28 May 2018

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PAR-CliP--a method to identify transcriptome-wide the binding sites of RNA binding proteins

28 May 2018

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iCLIP reveals the function of hnRNP particles in splicing at individual nucleotide resolution

28 May 2018

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28 May 2018

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28 May 2018

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Genome-wide analysis of PTB-RNA interactions reveals a strategy used by the general splicing repressor to modulate exon inclusion or skipping

28 May 2018

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HITS-CLIP yields genome-wide insights into brain alternative RNA processing

28 May 2018

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Flexibility in the site of exon junction complex deposition revealed by functional group and RNA secondary structure alterations in the splicing substrate

28 May 2018

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28 May 2018

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28 May 2018

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The ever-increasing complexities of the exon junction complex

28 May 2018

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eIF4AIII binds spliced mRNA in the exon junction complex and is essential for nonsense-mediated decay

28 May 2018

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CLIP identifies Nova-regulated RNA networks in the brain

28 May 2018

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The spliceosome deposits multiple proteins 20-24 nucleotides upstream of mRNA exon-exon junctions

28 May 2018

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A quantitative analysis of CLIP methods for identifying binding sites of RNA-binding proteins

28 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4918375

CLIP-seq of eIF4AIII reveals transcriptome-wide mapping of the human exon junction complex

16 August 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/26260686

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1038/NCOMMS8921

1 reference

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22 February 2020

0 references

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26260686%20AND%20SRC:MED&resulttype=core&format=json

22 February 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26260686%20AND%20SRC:MED&resulttype=core&format=json