A comprehensive genome-scale reconstruction of Escherichia coli metabolism--2011. (Q40519259)

21 September 2017

A comprehensive genome-scale reconstruction of Escherichia coli metabolism--2011. (English)

1 reference

S-adenosyl-L-homocysteine

21 September 2017

2 references

1 reference

ChEBI release 2020-05-28

1 reference

1 reference

1 reference

1 reference

1 reference

1 reference

1 reference

1 reference

1 reference

1 reference

2-amino-4-oxopentanoic acid

1 reference

1 reference

guanosine 5'-diphosphate (RRSR form)

1 reference

1 reference

S-adenosyl-L-homocysteine

1 reference

1 reference

1 reference

1 reference

1 reference

adenosine cyclic phosphate

1 reference

uridine diphosphate glucuronic acid

1 reference

1 reference

1 reference

1 reference

1 reference

1 reference

1 reference

1 reference

1 reference

1 reference

2-dehydro-3-deoxy-6-phospho-D-gluconic acid

1 reference

1,4-dihydroxy-2-naphthoic acid

1 reference

1 reference

1 reference

1 reference

deoxyguanosine monophosphate

1 reference

1 reference

1 reference

1 reference

1 reference

L-cysteine sulphinic acid

1 reference

dimethylallyl pyrophosphate

1 reference

1 reference

2,3-diaminopropionic acid

1 reference

5'-inosine monophosphate

1 reference

uridine 5'-triphosphoric acid

N(1)-acetylspermidine

1 reference

1 reference

1 reference

nicotinamide ribotide

1 reference

1 reference

gamma-glutamylcysteine

1 reference

1 reference

1 reference

1 reference

1 reference

1 reference

1 reference

1 reference

1 reference

1 reference

1 reference

1 reference

flavin adenine dinucleotide

1 reference

1 reference

P(1),P(5)-bis(5'-adenosyl) pentaphosphate

1 reference

1 reference

1 reference

1 reference

1 reference

1 reference

1 reference

1 reference

1 reference

1 reference

1 reference

4-methyl-5-thiazoleethanol

1 reference

P(1),P(4)-bis(5'-adenosyl) tetraphosphate

1 reference

1 reference

1 reference

1 reference

1 reference

L-alpha-Glycerylphosphorylcholine (GPC)

1 reference

1 reference

adenosine diphosphate ribose

1 reference

1 reference

1 reference

aminopropylcadaverine

1 reference

farnesyl pyrophosphate

1 reference

5,6-Dimethylbenzimidazole

3-phenyl propionic acid

1 reference

1 reference

1 reference

3'-uridinemonophosphate

1 reference

1 reference

1 reference

1 reference

1 reference

3-phosphoshikimic acid

1 reference

1 reference

JQXXHWHPUNPDRT-MJJHYSHBSA-N

1 reference

1 reference

glycine betaine aldehyde

1 reference

4-phospho-D-erythronic acid

flavin mononucleotide

1 reference

1 reference

1 reference

1 reference

1 reference

1 reference

1 reference

1 reference

1 reference

1 reference

alpha,alpha-trehalose

1 reference

1 reference

1 reference

1 reference

1 reference

1 reference

thiamine(1+) diphosphate

1 reference

1 reference

1 reference

7,8-dihydrofolic acid

1 reference

(4S,5S)-5'-methylthioadenosine

pyridoxamine phosphate

1 reference

1 reference

1 reference

(2E)-4-hydroxy-3-methylbut-2-en-1-yl trihydrogen diphosphate

cytidine 5'-diphosphate

1 reference

1 reference

1 reference

1 reference

1 reference

1 reference

(2R,3R,4R,5R)-5-(6-aminopurin-9-yl)-2-(hydroxymethyl)-5-methyl-4-sulfanyloxolan-3-ol

1 reference

thiamine phosphoric acid ester

1 reference

1 reference

1 reference

sn-glycero-3-phosphocholine

1 reference

1 reference

[hydroxy([(6E)-3,7,11-trimethyldodeca-2,6,10-trien-1-yl]oxy)phosphoryl]oxyphosphonic acid

1 reference

1 reference

1 reference

1 reference

1 reference

1 reference

1 reference

thiamine monophosphate

1 reference

1 reference

(2R,3R,4S,5R)-2-amino-3,4,5,6-tetrahydroxyhexanal

1 reference

1 reference

1 reference

cytidine triphosphate

1 reference

1 reference

deoxyuridine monophosphate

1 reference

uridine 5'-diphosphate

1 reference

(S)-4,5-dihydroxypentane-2,3-dione

1 reference

1 reference

guanosine cyclic 3',5'-phosphate

1 reference

1 reference

1 reference

cytidine monophosphate

1 reference

1 reference

1 reference

1 reference

1 reference

P(1),P(4)-bis(5'-guanosyl) tetraphosphate

1 reference

5-O-(1-carboxyvinyl)-3-phosphoshikimic acid

1 reference

1 reference

1 reference

2-phenylpropionic acid

1 reference

1 reference

unspecified tetracycline

1 reference

1 reference

1 reference

(R)-glyceryl 1-phosphate

1 reference

1 reference

1 reference

1 reference

1 reference

guanosine monophosphate

1 reference

1 reference

1 reference

1 reference

1 reference

1 reference

adenosine 3',5'-diphosphate

1 reference

1 reference

1 reference

2'-deoxyadenosine triphosphate

1 reference

3-phospho-D-glyceric acid

1 reference

1 reference

1 reference

1 reference

1 reference

1 reference

1 reference

1 reference

1 reference

1 reference

1 reference

1 reference

1 reference

1 reference

{[(3R,4S,5R,6R)-5-hydroxy-6-({2-hydroxy-3-[4-hydroxy-3-(3-methylbut-2-en-1-yl)benzamido]-8-methyl-4-oxochromen-7-yl}oxy)-3-methoxy-2,2-dimethyloxan-4-yl]oxy}methanimidic acid

1 reference

deoxyadenosine 5'-monophosphate

N-acetyl-D-galactosamine

1 reference

1 reference

1 reference

1 reference

1 reference

2-phosphoglycolic acid

1 reference

1 reference

1 reference

1 reference

1 reference

1 reference

1 reference

adenosine diphosphate

1 reference

guanosine triphosphate

1 reference

isopentenyl pyrophosphate

7-cyano-7-deazaguanine

1 reference

1 reference

adenosine monophosphate

1 reference

1 reference

1 reference

1 reference

adenosine triphosphate

1 reference

1 reference

1 reference

1 reference

deoxyguanosine triphosphate

1 reference

thymidine triphosphate

1 reference

Cytidine 5'-(dihydrogen phosphate)

N,N'-diacetylchitobiose

1 reference

1 reference

1 reference

1 reference

1 reference

deoxycytidine dihydrogen phosphate

1 reference

2-C-methyl-D-erythritol-2,4-cyclopyrophosphate

1 reference

octanoyl-CoA (unspecified stereochemistry)

1 reference

1 reference

L-methionine (R)-S-oxide

1 reference

1 reference

2-hydroxy-3-oxopropanoic acid

1 reference

1 reference

1 reference

D-erythro-1-(imidazol-4-yl)glycerol 3-phosphate

1 reference

undecaprenyl diphosphate

1 reference

N(2)-succinyl-L-glutamic acid

1 reference

1 reference

5,6-dimethyl-1-pentofuranosyl-1h-benzimidazole

1 reference

2-Amino-6-[(3,4,5,6-tetrahydroxy-2-oxohexyl)amino]hexanoic acid (non-preferred name)

1 reference

3-[(4S,5S,19S,20S)-10,14,19-tris(2-carboxyethyl)-5,9,15,20-tetrakis(carboxymethyl)-5,20-dimethyl-21,22,23,24-tetraazapentacyclo[16.2.1.1³,⁶.1⁸,¹¹.1¹³,¹⁶]tetracosa-1,3(24),6,8,10,12,14,16(22),17-nonaen-4-yl]propanoic acid

7,8-dihydro-D-neopterin

1 reference

1 reference

1 reference

1 reference

1 reference

2-[(3,4-Dihydroxy-2-oxo-5-phosphonooxypentyl)amino]benzoic acid

1 reference

S-[2-[3-[[4-[[[5-(6-aminopurin-9-yl)-4-hydroxy-3-phosphonooxyoxolan-2-yl]methoxy-hydroxyphosphoryl]oxy-hydroxyphosphoryl]oxy-2-hydroxy-3,3-dimethylbutanoyl]amino]propanoylamino]ethyl] dec-2-enethioate

1 reference

3-Ketostearoyl-coenzyme A

1 reference

1 reference

Sedoheptulose-1,7-diphosphate dibarium salt

1 reference

S-[2-[3-[[4-[[[5-(6-aminopurin-9-yl)-4-hydroxy-3-phosphonooxyoxolan-2-yl]methoxy-hydroxyphosphoryl]oxy-hydroxyphosphoryl]oxy-2-hydroxy-3,3-dimethylbutanoyl]amino]propanoylamino]ethyl] octadec-2-enethioate

1 reference

(S)-3-Hydroxytetradecanoyl-CoA; (Acyl-CoA); [M+H]+

1 reference

3-[18-(2-Carboxyethyl)-7,12-bis(ethenyl)-3,8,13,17-tetramethyl-21,23-dihydroporphyrin-2-yl]propanoic acid

1 reference

3-hydroxybutanoyl CoA

1 reference

1-{2-Deoxy-5-O-[hydroxy(phosphonooxy)phosphoryl]pentofuranosyl}pyrimidine-2,4(1H,3H)-dione

1 reference

2-[3-Acetamido-2,5-dihydroxy-6-(phosphonooxymethyl)oxan-4-yl]oxypropanoic acid

1 reference

1 reference

1 reference

[[5-(6-Aminopurin-9-yl)-3,4-dihydroxyoxolan-2-yl]methoxy-hydroxyphosphoryl] [5-(7,8-dimethyl-2,4-dioxo-1,5-dihydrobenzo[g]pteridin-10-yl)-2,3,4-trihydroxypentyl] hydrogen phosphate

1 reference

1 reference

[5-(2,6-dioxo-3H-purin-9-yl)-3,4-dihydroxyoxolan-2-yl]methyl phosphono hydrogen phosphate

1 reference

10-formyltetrahydropteroyl-ξ-glutamic acid

1 reference

glutamate-1-semialdehyde

1 reference

1 reference

N(8)-acetylspermidine

1 reference

3-hydroxybenzenepropanoic acid

1 reference

1 reference

4-hydroxy-L-threonine

1 reference

1 reference

N(2)-succinyl-L-ornithine

1 reference

1 reference

2-phospho-D-glyceric acid

1 reference

1 reference

S-[2-[3-[[4-[[[5-(6-aminopurin-9-yl)-4-hydroxy-3-phosphonooxyoxolan-2-yl]methoxy-hydroxyphosphoryl]oxy-hydroxyphosphoryl]oxy-2-hydroxy-3,3-dimethylbutanoyl]amino]propanoylamino]ethyl] oct-2-enethioate

1 reference

1 reference

[3,4-Dihydroxy-5-(phosphonooxymethyl)oxolan-2-yl] phosphono hydrogen phosphate

1 reference

1 reference

1 reference

1 reference

1 reference

[5-(6-Aminopurin-9-yl)-3-hydroxyoxolan-2-yl]methyl phosphono hydrogen phosphate

1 reference

Oxalyl-coenzyme A; (Acyl-CoA); [M+H]+

1 reference

1 reference

S-[2-[3-[[4-[[[5-(6-aminopurin-9-yl)-4-hydroxy-3-phosphonooxyoxolan-2-yl]methoxy-hydroxyphosphoryl]oxy-hydroxyphosphoryl]oxy-2-hydroxy-3,3-dimethylbutanoyl]amino]propanoylamino]ethyl] 3-hydroxyhexanethioate

1 reference

[5-(6-Aminopurin-9-yl)-3,4-dihydroxyoxolan-2-yl]methyl-(3-carboxy-3-oxopropyl)-methylsulfanium

1 reference

2-amino-3-(3H-imidazol-4-yl)propoxyphosphonic acid

1 reference

1 reference

1 reference

1 reference

S-Formylglutathionic acid(1-)

1 reference

GPNCBCJEDRRCDW-UHFFFAOYSA-N

1 reference

1-(2-Deoxy-5-o-phosphonopentofuranosyl)pyrimidine-2,4(1h,3h)-dione

1 reference

Coenzyme A, S-2-dodecenoate, (Z)-

1 reference

[2-(3,4-dihydroxy-5-oxo-2H-furan-2-yl)-2-hydroxyethyl] dihydrogen phosphate

1 reference

Adenosine 2',3'-cyclic phosphate

1 reference

[3-Acetamido-4,5-dihydroxy-6-(hydroxymethyl)oxan-2-yl] [hydroxy(3,7,11,15,19,23,27,31,35,39,43-undecamethyltetratetraconta-2,6,10,14,18,22,26,30,34,38,42-undecaenoxy)phosphoryl] hydrogen phosphate

1 reference

4-hydroxy-2-oxopentanoic acid

1 reference

4-amino-2-methyl-5-diphosphooxymethylpyrimidine

O-phospho-L-homoserine

1 reference

1 reference

1 reference

1 reference

1-(sn-glycero-3-phospho)-1D-myo-inositol

1 reference

octaprenyl diphosphate

1 reference

4-amino-2-methyl-5-phosphooxymethylpyrimidine

1 reference

1 reference

4-methyl-5-hydroxyethylthiazole phosphate

1 reference

1 reference

6-o-phosphonohexopyranosyl hexopyranoside

1 reference

1 reference

N5-carboxyaminoimidazole ribonucleotide

1 reference

2,3,4,5,6-pentahydroxyhexanoic acid

1 reference

1 reference

3-[10,14,19-tris(2-carboxyethyl)-5,9,15,20-tetrakis(carboxymethyl)-5,20-dimethyl-21,22,23,24-tetraazapentacyclo[16.2.1.1³,⁶.1⁸,¹¹.1¹³,¹⁶]tetracosa-1,3(24),6,8,10,13,15,17-octaen-4-yl]propanoic acid

1 reference

(3,4,5-trihydroxy-2-oxohexyl)oxyphosphonic acid

1 reference

4,5,6-Trihydroxy-2-oxo-7-phosphonooxyheptanoic acid

1 reference

[[5-(6-Aminopurin-9-yl)-3,4-dihydroxyoxolan-2-yl]methoxy-hydroxyphosphoryl] [6-(1,2-dihydroxyethyl)-3,4,5-trihydroxyoxan-2-yl] hydrogen phosphate

1 reference

[5-[(5-amino-2,4-dioxo-1H-pyrimidin-6-yl)amino]-3,4-dihydroxyoxolan-2-yl]methyl dihydrogen phosphate

1 reference

[2-Hydroxy-2-(3,4,5-trihydroxy-6-phosphonooxyoxan-2-yl)ethyl] dihydrogen phosphate

1 reference

S-[2-[3-[[4-[[[5-(6-aminopurin-9-yl)-4-hydroxy-3-phosphonooxyoxolan-2-yl]methoxy-hydroxyphosphoryl]oxy-hydroxyphosphoryl]oxy-2-hydroxy-3,3-dimethylbutanoyl]amino]propanoylamino]ethyl] 3-oxododecanethioate

1 reference

(R)-S-lactoylglutathionate anion

1 reference

1 reference

1 reference

1 reference

protoporphyrinogen IX

1 reference

Coenzyme A, S-(hydrogen methylpropanedioate)

1 reference

S-{1-[5-(6-Amino-9H-purin-9-yl)-4-hydroxy-3-(phosphonooxy)oxolan-2-yl]-3,5,9-trihydroxy-8,8-dimethyl-3,5,10,14-tetraoxo-2,4,6-trioxa-11,15-diaza-3lambda~5~,5lambda~5~-diphosphaheptadecan-17-yl} hexanethioate (non-preferred name)

1 reference

5-Amino-6 (5'phosphoribitylamino)uracil

1 reference

1 reference

3-Hydroxyoctadecanoyl-coenzyme A

1 reference

2,4,5-Trihydroxy-3-oxo-6-phosphonooxyhexanoic acid

1 reference

1 reference

[3,4,5-Trihydroxy-6-(4-hydroxyphenoxy)oxan-2-yl]methyl dihydrogen phosphate

1 reference

3-Oxodecanoyl-CoA; (Acyl-CoA); [M+H]+

1 reference

1 reference

1 reference

CID94; (Acyl-CoA); [M+H]+

1 reference

1 reference

1 reference

UDP N-acetyl-alpha-D-glucosamine

1 reference

dihydroxyacetone phosphate

1 reference

1 reference

malonyl-CoA (stereochemistry undefined)

1 reference

1 reference

N-succinyl-LL-2,6-diaminopimelic acid

1 reference

2-dehydro-3-deoxy-D-galactonic acid

1 reference

1 reference

2-propan-2-ylbut-2-enedioic acid

1 reference

1 reference

1 reference

1 reference

1-[3,4-Dihydroxy-5-(phosphonooxymethyl)oxolan-2-yl]pyridin-1-ium-3-carboxylic acid

1 reference

3,3',3'',3'''-[3,8,13,17-Tetrakis(carboxymethyl)-8,13-dimethyl-7,8,12,13-tetrahydroporphyrin-2,7,12,18-tetrayl]tetrapropanoic acid

1 reference

3,7-Dimethylocta-2,6-dienyl phosphono hydrogen phosphate

1 reference

3'-Phosphonato-5'-adenylyl sulfate

1 reference

1 reference

2-Amino-5-[[3-[2-[(4-amino-4-carboxybutanoyl)amino]-3-(carboxymethylamino)-3-oxopropyl]sulfanylselanylsulfanyl-1-(carboxymethylamino)-1-oxopropan-2-yl]amino]-5-oxopentanoic acid

1 reference

2-Amino-5-oxo-5-(4-oxobutylamino)pentanoic acid

1 reference

[5-(2-amino-6-oxo-1H-purin-9-yl)-4-hydroxy-2-[[hydroxy-[hydroxy(phosphonooxy)phosphoryl]oxyphosphoryl]oxymethyl]oxolan-3-yl] phosphono hydrogen phosphate

1 reference

(5-Amino-3,4-dihydroxyoxan-2-yl) [[5-(2,4-dioxopyrimidin-1-yl)-3,4-dihydroxyoxolan-2-yl]methoxy-hydroxyphosphoryl] hydrogen phosphate

1 reference

[2-[[[5-(2,4-Dioxopyrimidin-1-yl)-3,4-dihydroxyoxolan-2-yl]methoxy-hydroxyphosphoryl]oxy-hydroxyphosphoryl]oxy-5-hydroxy-6-(hydroxymethyl)-3-(3-hydroxytetradecanoylamino)oxan-4-yl] 3-hydroxytetradecanoate

1 reference

PubChem CID: 25201858; (Acyl-CoA); [M+H]+

1 reference

3-phosphoglyceraldehyde

1 reference

S-[2-[3-[[4-[[[5-(6-aminopurin-9-yl)-4-hydroxy-3-phosphonooxyoxolan-2-yl]methoxy-hydroxyphosphoryl]oxy-hydroxyphosphoryl]oxy-2-hydroxy-3,3-dimethylbutanoyl]amino]propanoylamino]ethyl] hex-2-enethioate

1 reference

[[5-(2,4-Dioxopyrimidin-1-yl)-3,4-dihydroxyoxolan-2-yl]methoxy-hydroxyphosphoryl] (5-formamido-3,4-dihydroxyoxan-2-yl) hydrogen phosphate

1 reference

OXJNZXDFVLDLEI-UHFFFAOYSA-N

1 reference

1 reference

(2E)-3-(methoxycarbonyl)pent-2-enedioic acid

1 reference

5,6,7,8-tetrahydropteridine

1 reference

1 reference

1 reference

3,4-dihydroxyphenylacetaldehyde

1 reference

2,3-Dihydroxy-N-benzoylserine

1 reference

1-Cyclohexene-1-carboxylic acid, 5-((1-carboxyethenyl)oxy)-4-hydroxy-3-(phosphonooxy)-

1 reference

N-(1-Hydroxyethylidene)-5-oxo-5-(phosphonooxy)norvaline

1 reference

glucosamine (pyranose form)

Xanthosine-monophosphate

1 reference

1 reference

1 reference

2-[[9-[3,4-Dihydroxy-5-(phosphonooxymethyl)oxolan-2-yl]purin-6-yl]amino]butanedioic acid

1 reference

4-[5-[3,4-Dihydroxy-6-(hydroxymethyl)-5-[3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxyoxan-2-yl]oxy-3,4-dihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy-2,3,5,6-tetrahydroxyhexanal

1 reference

[Hydroxy-[[3-hydroxy-5-(5-methyl-2,4-dioxopyrimidin-1-yl)oxolan-2-yl]methoxy]phosphoryl] (3,4,5-trihydroxy-6-methyloxan-2-yl) hydrogen phosphate

1 reference

1 reference

disodium acetyl glucosamine phosphate

1 reference

(3R)-3-hydroxyoctanoyl-CoA

1 reference

S-[2-[3-[[4-[[[5-(6-aminopurin-9-yl)-4-hydroxy-3-phosphonooxyoxolan-2-yl]methoxy-hydroxyphosphoryl]oxy-hydroxyphosphoryl]oxy-2-hydroxy-3,3-dimethylbutanoyl]amino]propanoylamino]ethyl] decanethioate

1 reference

S-[2-[3-[[4-[[[5-(6-aminopurin-9-yl)-4-hydroxy-3-phosphonooxyoxolan-2-yl]methoxy-hydroxyphosphoryl]oxy-hydroxyphosphoryl]oxy-2-hydroxy-3,3-dimethylbutanoyl]amino]propanoylamino]ethyl] 3-oxotetradecanethioate

1 reference

(3,4-Dihydroxy-6-methyl-5-oxooxan-2-yl) [hydroxy-[[3-hydroxy-5-(5-methyl-2,4-dioxopyrimidin-1-yl)oxolan-2-yl]methoxy]phosphoryl] hydrogen phosphate

1 reference

[3-Hydroxy-2-(hydroxymethyl)-5-(3-hydroxytetradecanoylamino)-6-phosphonooxyoxan-4-yl] 3-hydroxytetradecanoate

1 reference

[2-Hydroxy-2-(3,4,5,6-tetrahydroxyoxan-2-yl)ethyl] dihydrogen phosphate

1 reference

5-(1-Carboxyethenoxy)-2-(3-carboxypropanoyl)-6-hydroxycyclohex-3-ene-1-carboxylic acid

1 reference

1 reference

succinic semialdehyde

1 reference

[5-[1-[3,4-Dihydroxy-5-(phosphonooxymethyl)oxolan-2-yl]-6-iminopurin-9-yl]-3,4-dihydroxyoxolan-2-yl]methyl dihydrogen phosphate

1 reference

2-Amino-5-(4-aminobutylamino)-5-oxopentanoic acid

1 reference

1 reference

4-(trimethylammonio)butanoic acid

1 reference

(4S,4aS,5aS,6S,12aS)-4-(dimethylamino)-3,6,10,12,12a-pentahydroxy-6-methyl-1,11-dioxo-4,4a,5,5a-tetrahydrotetracene-2-carboximidic acid

1 reference

D-glucitol 6-phosphate

1 reference

N-acetyl-alpha-D-galactosamine 1-phosphate

1 reference

1 reference

2-dehydro-D-gluconic acid

1 reference

3-Carboxy-2,3-dideoxy-4-C-methylpentaric acid

1 reference

2-O-alpha-L-Mannopyranosyl-D-glyceric acid

1 reference

3,4,5-trihydroxypentan-2-one

1 reference

6-phosphogluconolactone

1 reference

[[5-(6-Aminopurin-9-yl)-3,4-dihydroxyoxolan-2-yl]methoxy-hydroxyphosphoryl] [3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl] hydrogen phosphate

1 reference

adenosine 5' phosphosulfate

1 reference

1-deoxy-D-xylulose 5-phosphate

1 reference

[[5-(4-Amino-2-oxopyrimidin-1-yl)-3,4-dihydroxyoxolan-2-yl]methoxy-hydroxyphosphoryl] (2,3,4-trihydroxy-3-methylbutyl) hydrogen phosphate

1 reference

[3-[2-Aminoethoxy(hydroxy)phosphoryl]oxy-2-hydroxypropyl] acetate

1 reference

1 reference

1 reference

2'-Deoxycytidine-5'-diphosphate sodium salt

1 reference

guanosine diphosphate mannose

1 reference

DJMVHSOAUQHPSN-UHFFFAOYSA-N

1 reference

[5-[4-Carbamoyl-5-[(3,4-dihydroxy-2-oxo-5-phosphonooxypentyl)iminomethylamino]imidazol-1-yl]-3,4-dihydroxyoxolan-2-yl]methyl dihydrogen phosphate

1 reference

n-Glycyl-5-o-phosphonopentofuranosylamine

1 reference

[5-(2-Amino-6-oxo-3,6-dihydro-9H-purin-9-yl)-3,4-dihydroxyoxolan-2-yl]methyl 3,4-dihydroxy-6-methyl-5-oxooxan-2-yl dihydrogen diphosphate (non-preferred name)

thymidine diphosphate

1 reference

1 reference

1 reference

2-[3-[(2-Hydroxy-3,3-dimethyl-4-phosphonooxybutanoyl)amino]propanoylamino]-3-sulfanylpropanoic acid

1 reference

JVUUYJGQIVCMIU-UHFFFAOYSA-N

1 reference

IMWOXEZVYQDRDF-UHFFFAOYSA-N

1 reference

S-[2-[3-[[4-[[[5-(6-aminopurin-9-yl)-4-hydroxy-3-phosphonooxyoxolan-2-yl]methoxy-hydroxyphosphoryl]oxy-hydroxyphosphoryl]oxy-2-hydroxy-3,3-dimethylbutanoyl]amino]propanoylamino]ethyl] tetradec-2-enethioate

1 reference

2,3,4,6-Tetrahydroxy-5-oxohexanoic acid

1 reference

[5-Hydroxy-2-[[3-hydroxy-5-(3-hydroxytetradecanoylamino)-4-(3-hydroxytetradecanoyloxy)-6-phosphonooxyoxan-2-yl]methoxy]-6-(hydroxymethyl)-3-(3-hydroxytetradecanoylamino)oxan-4-yl] 3-hydroxytetradecanoate

1 reference

[[5-(6-Aminopurin-9-yl)-3,4-dihydroxyoxolan-2-yl]methoxy-hydroxyphosphoryl] 5-(dithiolan-3-yl)pentanoate

1 reference

3-hydroxyhexanedioyl-CoA

1 reference

O-Phospho-DL-threonine

1 reference

S-[2-[3-[[4-[[[5-(6-aminopurin-9-yl)-4-hydroxy-3-phosphonooxyoxolan-2-yl]methoxy-hydroxyphosphoryl]oxy-hydroxyphosphoryl]oxy-2-hydroxy-3,3-dimethylbutanoyl]amino]propanoylamino]ethyl] 3-oxooctanethioate

1 reference

2-Succinylbenzoyl-coenzyme A

1 reference

(3,4-Dihydroxy-5-oxooxan-2-yl) [[5-(2,4-dioxopyrimidin-1-yl)-3,4-dihydroxyoxolan-2-yl]methoxy-hydroxyphosphoryl] hydrogen phosphate

1 reference

sedoheptulose 7-phosphate

1 reference

2,4,5,6-Tetrahydroxy-3-oxohexanoic acid

1 reference

(3-Aminopropyl){[5-(6-amino-9H-purin-9-yl)-3,4-dihydroxyoxolan-2-yl]methyl}methylsulfanium (non-preferred name)

1 reference

[5-(5,6-Dimethylbenzimidazol-1-yl)-3,4-dihydroxyoxolan-2-yl]methyl dihydrogen phosphate

1 reference

1 reference

2,3-dihydroxy-trans-cinnamic acid

1 reference

1 reference

guanosine pentaphosphate

1 reference

1 reference

2,5-didehydro-D-gluconic acid

1 reference

3-(imidazol-4-yl)-2-oxopropyl dihydrogen phosphate

coproporphyrinogen III

1 reference

1 reference

1 reference

5-amino-6-(D-ribitylamino)uracil

1 reference

1 reference

1 reference

4-hydroxyphenyl acetaldehyde

1 reference

1 reference

1 reference

[5-[(E)-[[5-carbamoyl-3-[3,4-dihydroxy-5-(phosphonooxymethyl)oxolan-2-yl]imidazol-4-yl]amino]methylideneamino]-3,4-dihydroxyoxolan-2-yl]methyl dihydrogen phosphate

1 reference

S-[2-[3-[[4-[[[5-(6-aminopurin-9-yl)-4-hydroxy-3-phosphonooxyoxolan-2-yl]methoxy-hydroxyphosphoryl]oxy-hydroxyphosphoryl]oxy-2-hydroxy-3,3-dimethylbutanoyl]amino]propanoylamino]ethyl] butanethioate

1 reference

4-(Phosphonooxy)threonine

1 reference

inositol monophosphate

1 reference

5-Phosphoribosyl-4-carboxy-5-aminoimidazole

1 reference

2,3,4-trihydroxy-3-methylbutoxyphosphonic acid

1 reference

3-[(2-Hydroxy-3,3-dimethyl-4-phosphonooxybutanoyl)amino]propanoic acid

1 reference

1 reference

1 reference

Formyl-coenzyme A; (Acyl-CoA); [M+H]+

1 reference

S-[2-[3-[[4-[[[5-(6-aminopurin-9-yl)-4-hydroxy-3-phosphonooxyoxolan-2-yl]methoxy-hydroxyphosphoryl]oxy-hydroxyphosphoryl]oxy-2-hydroxy-3,3-dimethylbutanoyl]amino]propanoylamino]ethyl] octadecanethioate

1 reference

S-[2-[3-[[4-[[[5-(6-aminopurin-9-yl)-4-hydroxy-3-phosphonooxyoxolan-2-yl]methoxy-hydroxyphosphoryl]oxy-hydroxyphosphoryl]oxy-2-hydroxy-3,3-dimethylbutanoyl]amino]propanoylamino]ethyl] dodecanethioate

1 reference

XAOLJGCZESYRFT-UHFFFAOYSA-N

1 reference

2-(3-Carboxypropanoylamino)-5-oxopentanoic acid

1 reference

6-[2-[3-[[4-[[[5-(6-Aminopurin-9-yl)-4-hydroxy-3-phosphonooxyoxolan-2-yl]methoxy-hydroxyphosphoryl]oxy-hydroxyphosphoryl]oxy-2-hydroxy-3,3-dimethylbutanoyl]amino]propanoylamino]ethylsulfanyl]-6-oxohex-4-enoic acid

1 reference

1 reference

P-(4-Hydroxy-3-methyl-2-buten-1-yl) trihydrogen (diphosphate)

1 reference

[6-(1,2-Dihydroxyethyl)-3,4,5-trihydroxyoxan-2-yl] dihydrogen phosphate

1 reference

S-[2-[3-[[4-[[[5-(6-aminopurin-9-yl)-4-hydroxy-3-phosphonooxyoxolan-2-yl]methoxy-hydroxyphosphoryl]oxy-hydroxyphosphoryl]oxy-2-hydroxy-3,3-dimethylbutanoyl]amino]propanoylamino]ethyl] hexadec-2-enethioate

1 reference

S-[2-[3-[[4-[[[5-(6-aminopurin-9-yl)-4-hydroxy-3-phosphonooxyoxolan-2-yl]methoxy-hydroxyphosphoryl]oxy-hydroxyphosphoryl]oxy-2-hydroxy-3,3-dimethylbutanoyl]amino]propanoylamino]ethyl] 3-oxohexadecanethioate

1 reference

N-[5-Amino-1-(5-O-phosphonopentofuranosyl)-1H-imidazole-4-carbonyl]aspartic acid

1 reference

3-Hydroxy-2-oxo-4-phosphonooxybutanoic acid

1 reference

1 reference

orotidine 5'-phosphate

1 reference

1 reference

1 reference

Cytosine deoxyribonucleoside

1 reference

1 reference

1 reference

1 reference

1 reference

6,7-dimethyl-8-(1-D-ribityl)lumazine

1 reference

gamma-glutamyl phosphate

1 reference

2-hydroxy-3-oxobutyl phosphate

1 reference

1 reference

DL-glyceric acid 1,3-biphosphate

1 reference

N(2)-succinyl-L-arginine

1 reference

S-methyl-L-methionine

1 reference

D-ribulose-5-phosphoric acid

1 reference

4-(L-gamma-glutamylamino)butanoic acid

1 reference

Dihydromonapterin triphosphate

glutathionylspermidine I

1 reference

1 reference

1 reference

glutamate-semialdehyde

1 reference

glucosamine 1-phosphate

1 reference

1-[5-[[[[5-(6-Aminopurin-9-yl)-3,4-dihydroxyoxolan-2-yl]methoxy-hydroxyphosphoryl]oxy-hydroxyphosphoryl]oxymethyl]-3,4-dihydroxyoxolan-2-yl]pyridin-1-ium-3-carboxylic acid

1 reference

[[5-(6-Aminopurin-9-yl)-3,4-dihydroxyoxolan-2-yl]methoxy-hydroxyphosphoryl] 2,3-dihydroxybenzoate

1 reference

4,5,6,7-Tetrahydroxy-2-oxo-8-phosphonooxyoctanoic acid

1 reference

[5-(7,8-Dimethyl-2,4-dioxo-1,5-dihydrobenzo[g]pteridin-10-yl)-2,3,4-trihydroxypentyl] dihydrogen phosphate

1 reference

2-Amino-6-[(3,4,5-trihydroxy-2-oxo-6-phosphonooxyhexyl)amino]hexanoic acid

1 reference

2-(3,7,11,15,19,23,27,31-Octamethyldotriaconta-2,6,10,14,18,22,26,30-octaenyl)phenol

1 reference

thymidine diphosphate glucose

1 reference

1 reference

S-[2-[3-[[4-[[[5-(6-aminopurin-9-yl)-4-hydroxy-3-phosphonooxyoxolan-2-yl]methoxy-hydroxyphosphoryl]oxy-hydroxyphosphoryl]oxy-2-hydroxy-3,3-dimethylbutanoyl]amino]propanoylamino]ethyl] 3-hydroxyhexadecanethioate

1 reference

S-[2-[3-[[4-[[[5-(6-aminopurin-9-yl)-4-hydroxy-3-phosphonooxyoxolan-2-yl]methoxy-hydroxyphosphoryl]oxy-hydroxyphosphoryl]oxy-2-hydroxy-3,3-dimethylbutanoyl]amino]propanoylamino]ethyl] 3-hydroxydodecanethioate

1 reference

But-2-ene-1,2,3-tricarboxylic acid

1 reference

CID5118008; (Acyl-CoA); [M+H]+

1 reference

9-[5-O-(hydroxy{[hydroxy(phosphonooxy)phosphoryl]oxy}phosphoryl)pentofuranosyl]-3,9-dihydro-1H-purine-2,6-dione

1 reference

4-amino-1-[2-hydroxy-6-(hydroxymethyl)-2-oxidotetrahydrofuro[3,4-d][1,3,2]dioxaphosphol-4-yl]pyrimidin-2(1H)-one

1 reference

[[5-(4-Amino-2-oxopyrimidin-1-yl)-3,4-dihydroxyoxolan-2-yl]methoxy-hydroxyphosphoryl] (2,4-dihydroxy-3-methyl-3-phosphonooxybutyl) hydrogen phosphate

1 reference

3-mercaptopyruvic acid

1 reference

1 reference

1 reference

DL-fructose-6-phosphate

1 reference

all-trans-octaprenyl diphosphate

1 reference

4

1 reference

21 September 2017

Hojung Nam

5

0 references

Bernhard Palsson

series ordinal

7

object named as

Bernhard Ø Palsson

1 reference

21 September 2017

6

Adam M Feist

1 reference

21 September 2017

1

Jeffrey D Orth

1 reference

21 September 2017

Tom M Conrad

2

1 reference

21 September 2017

Jessica Na

series ordinal

3

1 reference

21 September 2017

11 October 2011

1 reference

https://europepmc.org/articles/pmc3261703?pdf=render

21 September 2017

language of work or name

English

0 references

work available at URL

1 reference

19 March 2024

https://api.unpaywall.org/v2/10.1038/msb.2011.65?email=unpaywall_01@example.com

published in

Molecular Systems Biology

1 reference

21 September 2017

7

1 reference

21 September 2017

1

1 reference

http://api.crossref.org/works/10.1038%2Fmsb.2011.65

page(s)

535

1 reference

https://api.unpaywall.org/v2/10.1038/msb.2011.65?email=unpaywall_01@example.com

21 September 2017

1 reference

19 March 2024

access restriction status

open access

1 reference

based on heuristic

inferred from online access status

cites work

Core and panmetabolism in Escherichia coli

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3261703

The genome sequence of E. coli W (ATCC 9637): comparative genome analysis and an improved genome-scale reconstruction of E. coli

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3261703

Overexpression of biotin synthase and biotin ligase is required for efficient generation of sulfur-35 labeled biotin in E. coli

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3261703

High-throughput generation, optimization and analysis of genome-scale metabolic models

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3261703

Systematizing the generation of missing metabolic knowledge

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3261703

The biomass objective function

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3261703

What is flux balance analysis?

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3261703

A protocol for generating a high-quality genome-scale metabolic reconstruction

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3261703

KEGG for representation and analysis of molecular networks involving diseases and drugs

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3261703

Model-driven evaluation of the production potential for growth-coupled products of Escherichia coli

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3261703

Metabolic systems biology

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3261703

Genome-scale reconstruction of Escherichia coli's transcriptional and translational machinery: a knowledge base, its mathematical formulation, and its functional characterization

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3261703

EcoCyc: a comprehensive view of Escherichia coli biology

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3261703

The growing scope of applications of genome-scale metabolic reconstructions using Escherichia coli

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3261703

A genome-scale metabolic reconstruction for Escherichia coli K-12 MG1655 that accounts for 1260 ORFs and thermodynamic information

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3261703

Quantitative prediction of cellular metabolism with constraint-based models: the COBRA Toolbox

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3261703

Construction of Escherichia coli K-12 in-frame, single-gene knockout mutants: the Keio collection

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3261703

Escherichia coli K-12: a cooperatively developed annotation snapshot--2005

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3261703

Integrating high-throughput and computational data elucidates bacterial networks

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3261703

An expanded genome-scale model of Escherichia coli K-12 (iJR904 GSM/GPR)

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3261703

Cross-species sequence comparisons: a review of methods and available resources

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3261703

The Escherichia coli MG1655 in silico metabolic genotype: its definition, characteristics, and capabilities

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3261703

Improved tools for biological sequence comparison

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3261703

Experimental and computational assessment of conditionally essential genes in Escherichia coli

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3261703

Update on the Keio collection of Escherichia coli single-gene deletion mutants

25 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3261703

Microbial metalloproteomes are largely uncharacterized

17 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3261703

Genome-derived minimal metabolic models for Escherichia coli MG1655 with estimated in vivo respiratory ATP stoichiometry

20 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3261703

EchoLOCATION: an in silico analysis of the subcellular locations of Escherichia coli proteins and comparison with experimentally derived locations

20 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3261703

Optimization based automated curation of metabolic reconstructions

20 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3261703

Iron-sulfur clusters: ever-expanding roles

20 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3261703

The energetic conversion competence of Escherichia coli during aerobic respiration studied by 31P NMR using a circulating fermentation system

20 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3261703

20 August 2018

Identifiers

DOI

10.1038/MSB.2011.65

1 reference

21 September 2017

1 reference

21 September 2017

PubMed publication ID

21988831

1 reference