AREsite2: an enhanced database for the comprehensive investigation of AU/GU/U-rich elements (Q40279929)

19 September 2017

AREsite2: an enhanced database for the comprehensive investigation of AU/GU/U-rich elements (English)

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19 September 2017

3

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19 September 2017

5

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19 September 2017

Jörg Fallmann

1

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Pavel Kovarik

object named as

Pavel Kovarik

series ordinal

4

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Vitaly Sedlyarov

object named as

Vitaly Sedlyarov

series ordinal

2

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publication date

23 November 2015

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19 September 2017

Nucleic Acids Research

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19 September 2017

44

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19 September 2017

D1

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19 September 2017

D90-5

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Creative Commons Attribution 4.0 International

19 September 2017

start time

15 November 2016

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April 2022 Public Data File from Crossref

copyright status

copyrighted

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cites work

CLIPdb: a CLIP-seq database for protein-RNA interactions

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4702876

The C-terminal RNA binding motif of HuR is a multi-functional domain leading to HuR oligomerization and binding to U-rich RNA targets.

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4702876

ELAVL1 modulates transcriptome-wide miRNA binding in murine macrophages

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4702876

PAR-CLIP analysis uncovers AUF1 impact on target RNA fate and genome integrity

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4702876

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4702876

Global target mRNA specification and regulation by the RNA-binding protein ZFP36.

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4702876

Protein-RNA interactions: new genomic technologies and perspectives

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4702876

Global assessment of GU-rich regulatory content and function in the human transcriptome

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4702876

AREsite: a database for the comprehensive investigation of AU-rich elements

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4702876

Transcriptome-wide identification of RNA-binding protein and microRNA target sites by PAR-CLIP

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4702876

BEDTools: a flexible suite of utilities for comparing genomic features

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4702876

Conserved GU-rich elements mediate mRNA decay by binding to CUG-binding protein 1

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4702876

ARED 3.0: the large and diverse AU-rich transcriptome.

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4702876

ARE-mRNA degradation requires the 5'-3' decay pathway.

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4702876

Distribution and intensity of constraint in mammalian genomic sequence

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4702876

AU-rich elements and the control of gene expression through regulated mRNA stability

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4702876

Forna (force-directed RNA): Simple and effective online RNA secondary structure diagrams

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4702876

RNA Accessibility in cubic time

25 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4702876

Prediction of locally stable RNA secondary structures for genome-wide surveys.

20 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4702876

TGF-β induces the expression of the adaptor Ndfip1 to silence IL-4 production during iTreg cell differentiation

20 August 2018

1 reference

Crossref

https://api.crossref.org/works/10.1093%2FNAR%2FGKV1238

AURA 2: Empowering discovery of post-transcriptional networks

21 January 2018

1 reference

Crossref

https://api.crossref.org/works/10.1093%2FNAR%2FGKV1238

Natural and engineered nicking endonucleases--from cleavage mechanism to engineering of strand-specificity

21 January 2018

1 reference

Crossref

https://api.crossref.org/works/10.1093%2FNAR%2FGKV1238

21 January 2018

Identifiers

DOI

10.1093/NAR/GKV1238

1 reference

journals/nar/FallmannSTKH16

19 September 2017

1 reference

DBLP Dataset 2021-01-02

28 January 2021

1 reference

PMC publication ID

4702876

19 September 2017

PubMed publication ID

26602692

1 reference

PMC publication ID

4702876