Loss of DNA methylation in zebrafish embryos activates retrotransposons to trigger antiviral signaling. (Q40126784)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28698226%20AND%20SRC:MED&resulttype=core&format=json

25 March 2020

title

Loss of DNA methylation in zebrafish embryos activates retrotransposons to trigger antiviral signaling (English)

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28698226%20AND%20SRC:MED&resulttype=core&format=json

25 March 2020

0 references

0 references

0 references

11

1 reference

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25 March 2020

Kirsten C Sadler

13

1 reference

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25 March 2020

author name string

Yelena Chernyavskaya

1

1 reference

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25 March 2020

Raksha Mudbhary

2

1 reference

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25 March 2020

Chi Zhang

3

1 reference

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25 March 2020

Debra Tokarz

4

1 reference

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25 March 2020

Vinitha Jacob

5

1 reference

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25 March 2020

Smita Gopinath

6

1 reference

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25 March 2020

Xiaochen Sun

7

1 reference

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25 March 2020

Shuang Wang

8

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28698226%20AND%20SRC:MED&resulttype=core&format=json

25 March 2020

Elena Magnani

9

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28698226%20AND%20SRC:MED&resulttype=core&format=json

25 March 2020

Bhavani P Madakashira

10

1 reference

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25 March 2020

Yujin Hoshida

12

1 reference

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25 March 2020

language of work or name

English

0 references

publication date

11 July 2017

1 reference

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25 March 2020

number of pages

15

1 reference

based on heuristic

inferred from page(s)

published in

Development

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28698226%20AND%20SRC:MED&resulttype=core&format=json

25 March 2020

volume

144

1 reference

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25 March 2020

page(s)

2925-2939

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28698226%20AND%20SRC:MED&resulttype=core&format=json

25 March 2020

issue

16

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28698226%20AND%20SRC:MED&resulttype=core&format=json

describes a project that uses

25 March 2020

ImageJ

1 reference

11 June 2022

https://www.ebi.ac.uk/europepmc/webservices/rest/PMC5592811/fullTextXML

based on heuristic

inferred from PubMed Central ID database lookup

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Crossing the LINE Toward Genomic Instability: LINE-1 Retrotransposition in Cancer

14 September 2018

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14 September 2018

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DNA-Demethylating Agents Target Colorectal Cancer Cells by Inducing Viral Mimicry by Endogenous Transcripts.

14 September 2018

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Non-germ Line Restoration of Genomic Imprinting for a Small Subset of Imprinted Genes in Ubiquitin-like PHD and RING Finger Domain-Containing 1 (Uhrf1) Null Mouse Embryonic Stem Cells

14 September 2018

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Intrinsic retroviral reactivation in human preimplantation embryos and pluripotent cells

14 September 2018

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Innate immune recognition of DNA: A recent history

14 September 2018

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Epigenetic control of intestinal barrier function and inflammation in zebrafish

14 September 2018

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Developmental enhancers revealed by extensive DNA methylome maps of zebrafish early embryos.

14 September 2018

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DNA hypomethylation induces a DNA replication-associated cell cycle arrest to block hepatic outgrowth in uhrf1 mutant zebrafish embryos

14 September 2018

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Genome-wide distribution of RNA-DNA hybrids identifies RNase H targets in tRNA genes, retrotransposons and mitochondria

14 September 2018

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14 September 2018

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14 September 2018

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The enemy within: endogenous retroelements and autoimmune disease

14 September 2018

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methylC Track: visual integration of single-base resolution DNA methylation data on the WashU EpiGenome Browser

14 September 2018

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14 September 2018

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Contrasted innate responses to two viruses in zebrafish: insights into the ancestral repertoire of vertebrate IFN-stimulated genes.

14 September 2018

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UHRF1 overexpression drives DNA hypomethylation and hepatocellular carcinoma

14 September 2018

1 reference

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Toll-like receptor 9 and 21 have different ligand recognition profiles and cooperatively mediate activity of CpG-oligodeoxynucleotides in zebrafish

14 September 2018

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Real-time whole-body visualization of Chikungunya Virus infection and host interferon response in zebrafish

14 September 2018

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Genome-wide DNA methylation analysis of systemic lupus erythematosus reveals persistent hypomethylation of interferon genes and compositional changes to CD4+ T-cell populations

14 September 2018

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Cancer as a dysregulated epigenome allowing cellular growth advantage at the expense of the host

14 September 2018

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Passive and active DNA methylation and the interplay with genetic variation in gene regulation

14 September 2018

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Reprogramming the maternal zebrafish genome after fertilization to match the paternal methylation pattern

14 September 2018

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Genome-wide DNA methylation study suggests epigenetic accessibility and transcriptional poising of interferon-regulated genes in naïve CD4+ T cells from lupus patients

14 September 2018

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The zebrafish reference genome sequence and its relationship to the human genome

14 September 2018

1 reference

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p53 cooperates with DNA methylation and a suicidal interferon response to maintain epigenetic silencing of repeats and noncoding RNAs

14 September 2018

1 reference

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Active transposition in genomes

14 September 2018

1 reference

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An integrative analysis of DNA methylation and RNA-Seq data for human heart, kidney and liver

14 September 2018

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Functions of DNA methylation: islands, start sites, gene bodies and beyond

14 September 2018

1 reference

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Molecular basis of Tank-binding kinase 1 activation by transautophosphorylation

14 September 2018

1 reference

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Mobile elements in the human genome: implications for disease

14 September 2018

1 reference

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Teleost fish interferons and their role in immunity

14 September 2018

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Crystal Structure of Zebrafish Interferons I and II Reveals Conservation of Type I Interferon Structure in Vertebrates

14 September 2018

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14 September 2018

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14 September 2018

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DNA hypomethylation causes bile duct defects in zebrafish and is a distinguishing feature of infantile biliary atresia.

14 September 2018

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Uhrf1 and Dnmt1 are required for development and maintenance of the zebrafish lens

14 September 2018

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mpeg1 promoter transgenes direct macrophage-lineage expression in zebrafish.

14 September 2018

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Repression of retrotransposal elements in mouse embryonic stem cells is primarily mediated by a DNA methylation-independent mechanism

14 September 2018

1 reference

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Conservation and divergence of methylation patterning in plants and animals

14 September 2018

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14 September 2018

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14 September 2018

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The two groups of zebrafish virus-induced interferons signal via distinct receptors with specific and shared chains

14 September 2018

1 reference

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Requirement for DNA CpG content in TLR9-dependent dendritic cell activation induced by DNA-containing immune complexes

14 September 2018

1 reference

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Loss of Dnmt1 catalytic activity reveals multiple roles for DNA methylation during pancreas development and regeneration

14 September 2018

1 reference

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Transcriptional silencing and reactivation in transgenic zebrafish

14 September 2018

1 reference

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Use of the pharmacological inhibitor BX795 to study the regulation and physiological roles of TBK1 and IkappaB kinase epsilon: a distinct upstream kinase mediates Ser-172 phosphorylation and activation

14 September 2018

1 reference

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TopHat: discovering splice junctions with RNA-Seq

14 September 2018

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Structure and Hemimethylated CpG Binding of the SRA Domain from Human UHRF1

14 September 2018

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14 September 2018

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Recognition of hemi-methylated DNA by the SRA protein UHRF1 by a base-flipping mechanism

14 September 2018

1 reference

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Structural basis for recognition of hemi-methylated DNA by the SRA domain of human UHRF1

14 September 2018

1 reference

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The SRA domain of UHRF1 flips 5-methylcytosine out of the DNA helix

14 September 2018

1 reference

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QUMA: quantification tool for methylation analysis

14 September 2018

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DNA hypomethylation is crucial for apoptotic DNA to induce systemic lupus erythematosus-like autoimmune disease in SLE-non-susceptible mice

14 September 2018

1 reference

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The SRA protein Np95 mediates epigenetic inheritance by recruiting Dnmt1 to methylated DNA

14 September 2018

1 reference

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UHRF1 plays a role in maintaining DNA methylation in mammalian cells

14 September 2018

1 reference

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The zebrafish lysozyme C promoter drives myeloid-specific expression in transgenic fish

14 September 2018

1 reference

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Identification of the zebrafish IFN receptor: implications for the origin of the vertebrate IFN system.

14 September 2018

1 reference

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Liver growth in the embryo and during liver regeneration in zebrafish requires the cell cycle regulator, uhrf1

14 September 2018

1 reference

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The pyrophosphate analogue foscarnet traps the pre-translocational state of HIV-1 reverse transcriptase in a Brownian ratchet model of polymerase translocation

14 September 2018

1 reference

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Innate immune responses: crosstalk of signaling and regulation of gene transcription

14 September 2018

1 reference

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14 September 2018

1 reference

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Gene set enrichment analysis: a knowledge-based approach for interpreting genome-wide expression profiles

14 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5592811

Repbase Update, a database of eukaryotic repetitive elements

14 September 2018

1 reference

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The interferon system of teleost fish.

14 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5592811

Interplay of pu.1 and gata1 determines myelo-erythroid progenitor cell fate in zebrafish

14 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5592811

Spatial and temporal expression of the zebrafish genome by large-scale in situ hybridization screening.

14 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5592811

Bioconductor: open software development for computational biology and bioinformatics

14 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5592811

Identification of 315 genes essential for early zebrafish development

14 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5592811

Genome structure and thymic expression of an endogenous retrovirus in zebrafish

14 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5592811

Epigenomic stress response. Knockdown of DNA methyltransferase 1 triggers an intra-S-phase arrest of DNA replication and induction of stress response genes

14 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5592811

MethPrimer: designing primers for methylation PCRs

14 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5592811

Zebrafish early macrophages colonize cephalic mesenchyme and developing brain, retina, and epidermis through a M-CSF receptor-dependent invasive process.

14 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5592811

Interferon activation and innate immunity.

14 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5592811

Loss of genomic methylation causes p53-dependent apoptosis and epigenetic deregulation

14 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5592811

A Toll-like receptor recognizes bacterial DNA

14 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5592811

Cytosine methylation and the ecology of intragenomic parasites

14 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5592811

Role for DNA methylation in genomic imprinting

14 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5592811

Mechanism of action of foscarnet against viral polymerases

14 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5592811

Metabolomic correlation-network modules in Arabidopsis based on a graph-clustering approach.

14 September 2018

1 reference

Crossref

https://api.crossref.org/works/10.1242%2FDEV.147629

21 January 2018

Identifiers

DOI

10.1242/DEV.147629

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28698226%20AND%20SRC:MED&resulttype=core&format=json

25 March 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28698226%20AND%20SRC:MED&resulttype=core&format=json

25 March 2020

1 reference