Active medulloblastoma enhancers reveal subgroup-specific cellular origins (Q37517791)

20 August 2017

Active medulloblastoma enhancers reveal subgroup-specific cellular origins (English)

1 reference

20 August 2017

0 references

34

1 reference

20 August 2017

10

Hans-Jörg Warnatz

0 references

Marie-Laure Yaspo

33

Marie-Laure Yaspo

1 reference

20 August 2017

Maia Segura-Wang

16

0 references

Alexander J Federation

Alexander J Federation

5

0 references

Ivo Buchhalter

Ivo Buchhalter

21

0 references

Serap Erkek

Serap Erkek

2

0 references

Sebastian M Waszak

Sebastian M Waszak

17

0 references

Lukas Chavez

Lukas Chavez

24

0 references

Volker Hovestadt

Volker Hovestadt

20

0 references

Kathleen J Millen

Kathleen J Millen

30

0 references

Stefan M. Pfister

Stefan M Pfister

37

0 references

Hans Lehrach

32

Hans Lehrach

1 reference

20 August 2017

35

Peter Lichter

1 reference

20 August 2017

19

Marcel Kool

1 reference

20 August 2017

39

Paul A Northcott

1 reference

20 August 2017

11

Barbara C Worst

1 reference

20 August 2017

27

Andrey Korshunov

1 reference

20 August 2017

18

David T W Jones

1 reference

20 August 2017

36

Jan O Korbel

1 reference

20 August 2017

13

Brent A Orr

1 reference

20 August 2017

26

Marina Ryzhova

1 reference

20 August 2017

22

Laura Sieber

1 reference

20 August 2017

Vyacheslav Amstislavskiy

31

Vyacheslav Amstislavskiy

1 reference

20 August 2017

8

Daisuke Kawauchi

1 reference

20 August 2017

6

Marc Zapatka

1 reference

20 August 2017

9

Thomas Risch

1 reference

20 August 2017

23

Pascal Johann

1 reference

20 August 2017

3

Yiai Tong

1 reference

20 August 2017

25

Stefan Gröschel

1 reference

20 August 2017

Charles Y Lin

1

1 reference

20 August 2017

Linlin Yin

4

1 reference

20 August 2017

Parthiv Haldipur

7

1 reference

20 August 2017

Bensheng Ju

12

1 reference

20 August 2017

Rhamy Zeid

14

1 reference

20 August 2017

Donald R Polaski

15

1 reference

20 August 2017

Wenbiao Chen

28

1 reference

20 August 2017

Victor V Chizhikov

29

1 reference

20 August 2017

James E Bradner

38

1 reference

20 August 2017

language of work or name

English

0 references

publication date

27 January 2016

1 reference

20 August 2017

1 reference

20 August 2017

530

1 reference

20 August 2017

7588

1 reference

20 August 2017

57-62

1 reference

https://scigraph.springernature.com/pub.10.1038/nature16546

20 August 2017

0 references

cites work

Integrative analysis of 111 reference human epigenomes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5168934

Topologically associating domains are stable units of replication-timing regulation

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5168934

Basic4Cseq: an R/Bioconductor package for analyzing 4C-seq data

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5168934

Enhancer hijacking activates GFI1 family oncogenes in medulloblastoma

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5168934

A single oncogenic enhancer rearrangement causes concomitant EVI1 and GATA2 deregulation in leukemia

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5168934

Discovery and characterization of super-enhancer-associated dependencies in diffuse large B cell lymphoma.

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5168934

A high-resolution map of the three-dimensional chromatin interactome in human cells

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5168934

Super-enhancers in the control of cell identity and disease

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5168934

Targeting BTK with ibrutinib in relapsed chronic lymphocytic leukemia

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5168934

Selective inhibition of tumor oncogenes by disruption of super-enhancers

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5168934

Master transcription factors and mediator establish super-enhancers at key cell identity genes

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5168934

STRING v9.1: protein-protein interaction networks, with increased coverage and integration

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5168934

Medulloblastomics: the end of the beginning

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5168934

The accessible chromatin landscape of the human genome

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5168934

An integrated encyclopedia of DNA elements in the human genome

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5168934

4C technology: protocols and data analysis.

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5168934

Conditional control of gene function by an invertible gene trap in zebrafish

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5168934

Dissecting the genomic complexity underlying medulloblastoma

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5168934

Subgroup-specific structural variation across 1,000 medulloblastoma genomes

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5168934

Novel mutations target distinct subgroups of medulloblastoma.

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5168934

A simple strand-specific RNA-Seq library preparation protocol combining the Illumina TruSeq RNA and the dUTP methods

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5168934

A strand-specific library preparation protocol for RNA sequencing

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5168934

23 August 2017

Mapping cancer origins

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5168934

FIMO: scanning for occurrences of a given motif

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5168934

A unique chromatin signature uncovers early developmental enhancers in humans

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5168934

Subtypes of medulloblastoma have distinct developmental origins

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5168934

Integrative genomic analysis of medulloblastoma identifies a molecular subgroup that drives poor clinical outcome

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5168934

Medulloblastoma comprises four distinct molecular variants

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5168934

Genome-wide histone acetylation data improve prediction of mammalian transcription factor binding sites

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5168934

Lmx1a regulates fates and location of cells originating from the cerebellar rhombic lip and telencephalic cortical hem

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5168934

Widespread transcription at neuronal activity-regulated enhancers

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5168934

MEME SUITE: tools for motif discovery and searching

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5168934

A census of human transcription factors: function, expression and evolution

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5168934

Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5168934

ClueGO: a Cytoscape plug-in to decipher functionally grouped gene ontology and pathway annotation networks

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5168934

Model-based analysis of ChIP-Seq (MACS)

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5168934

Medulloblastoma can be initiated by deletion of Patched in lineage-restricted progenitors or stem cells

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5168934

Acquisition of granule neuron precursor identity is a critical determinant of progenitor cell competence to form Shh-induced medulloblastoma

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5168934

Simultaneous inference in general parametric models

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5168934

Development of the deep cerebellar nuclei: transcription factors and cell migration from the rhombic lip

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5168934

TRANSFAC and its module TRANSCompel: transcriptional gene regulation in eukaryotes

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5168934

Mouse Zic1 is involved in cerebellar development

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5168934

Decoding the regulatory landscape of medulloblastoma using DNA methylation sequencing

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5168934

Transcriptional enhancers: from properties to genome-wide predictions

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5168934

Mechanistic insight into ALK receptor tyrosine kinase in human cancer biology

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5168934

HD-MB03 is a novel Group 3 medulloblastoma model demonstrating sensitivity to histone deacetylase inhibitor treatment.

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5168934

The clinical implications of medulloblastoma subgroups

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5168934

Chromatin accessibility pre-determines glucocorticoid receptor binding patterns.

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5168934

Epigenomics: Roadmap for regulation

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5168934

Presenting the epigenome roadmap.

2 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5168934

Robust molecular subgrouping and copy-number profiling of medulloblastoma from small amounts of archival tumour material using high-density DNA methylation arrays

2 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5168934

Expression of Sonic hedgehog during cell proliferation in the human cerebellum.

2 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5168934

The mouse Dreher gene Lmx1a controls formation of the roof plate in the vertebrate CNS.

2 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5168934

REMISSION INDUCTION IN NON-HODGKIN LYMPHOMA WITH RESHAPED HUMAN MONOCLONAL ANTIBODY CAMPATH-1H

2 September 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/26814967

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Population Variation and Genetic Control of Modular Chromatin Architecture in Humans

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/26814967

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1038/NATURE16546

1 reference

journals/nature/LinETYFZHKRWWJO16

20 August 2017

1 reference

DBLP Dataset 2021-01-02

28 January 2021

1 reference

20 August 2017

1 reference