FOXA1, GATA3 and PPARɣ Cooperate to Drive Luminal Subtype in Bladder Cancer: A Molecular Analysis of Established Human Cell Lines (Q37479778)

20 August 2017

FOXA1, GATA3 and PPARɣ Cooperate to Drive Luminal Subtype in Bladder Cancer: A Molecular Analysis of Established Human Cell Lines (English)

1 reference

20 August 2017

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1 reference

2

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27924948%20AND%20SRC:MED&resulttype=core&format=json

7 June 2020

Hironobu Yamashita

3

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27924948%20AND%20SRC:MED&resulttype=core&format=json

7 June 2020

author name string

Joshua I Warrick

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27924948%20AND%20SRC:MED&resulttype=core&format=json

7 June 2020

Eunah Chung

4

1 reference

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7 June 2020

Lauren Shuman

5

1 reference

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7 June 2020

Vasty Osei Amponsa

6

1 reference

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7 June 2020

Zongyu Zheng

7

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27924948%20AND%20SRC:MED&resulttype=core&format=json

7 June 2020

Wilson Chan

8

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27924948%20AND%20SRC:MED&resulttype=core&format=json

7 June 2020

Tiffany L Whitcomb

9

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27924948%20AND%20SRC:MED&resulttype=core&format=json

7 June 2020

Feng Yue

10

1 reference

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7 June 2020

Tejaswi Iyyanki

11

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27924948%20AND%20SRC:MED&resulttype=core&format=json

7 June 2020

Yuka I Kawasawa

12

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27924948%20AND%20SRC:MED&resulttype=core&format=json

7 June 2020

Matthew Kaag

13

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27924948%20AND%20SRC:MED&resulttype=core&format=json

7 June 2020

Wansong Guo

14

1 reference

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7 June 2020

Jay D Raman

15

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7 June 2020

Joo-Seop Park

16

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27924948%20AND%20SRC:MED&resulttype=core&format=json

7 June 2020

David J DeGraff

17

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27924948%20AND%20SRC:MED&resulttype=core&format=json

7 June 2020

language of work or name

English

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publication date

7 December 2016

1 reference

20 August 2017

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27924948%20AND%20SRC:MED&resulttype=core&format=json

7 June 2020

volume

6

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27924948%20AND%20SRC:MED&resulttype=core&format=json

7 June 2020

page(s)

38531

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Creative Commons Attribution 4.0 International

7 June 2020

copyright license

start time

1 December 2016

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

describes a project that uses

limma

object named as

limma

2 references

22 June 2022

https://europepmc.org/article/PMC/5141480

inferred from PubMed Central ID database lookup

CZ Software Mentions: A large dataset of software mentions in the biomedical literature

exact match

https://scigraph.springernature.com/pub.10.1038/srep38531

0 references

cites work

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Molecular subtypes of urothelial carcinoma are defined by specific gene regulatory systems

23 August 2017

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The UBC-40 Urothelial Bladder Cancer cell line index: a genomic resource for functional studies

23 August 2017

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Loss of FOXA1 Drives Sexually Dimorphic Changes in Urothelial Differentiation and Is an Independent Predictor of Poor Prognosis in Bladder Cancer

23 August 2017

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Oncogenic HRAS Activates Epithelial-to-Mesenchymal Transition and Confers Stemness to p53-Deficient Urothelial Cells to Drive Muscle Invasion of Basal Subtype Carcinomas

23 August 2017

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limma powers differential expression analyses for RNA-sequencing and microarray studies

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MPDL3280A (anti-PD-L1) treatment leads to clinical activity in metastatic bladder cancer

23 August 2017

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MicroRNA-99a and 100 mediated upregulation of FOXA1 in bladder cancer

23 August 2017

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Identification of distinct basal and luminal subtypes of muscle-invasive bladder cancer with different sensitivities to frontline chemotherapy

23 August 2017

1 reference

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Intrinsic subtypes of high-grade bladder cancer reflect the hallmarks of breast cancer biology

23 August 2017

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Comprehensive molecular characterization of urothelial bladder carcinoma

23 August 2017

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Deficiency in metabolic regulators PPARγ and PTEN cooperates to drive keratinizing squamous metaplasia in novel models of human tissue regeneration.

23 August 2017

1 reference

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Loss of the urothelial differentiation marker FOXA1 is associated with high grade, late stage bladder cancer and increased tumor proliferation.

23 August 2017

1 reference

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The Cancer Cell Line Encyclopedia enables predictive modelling of anticancer drug sensitivity

23 August 2017

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Fast gapped-read alignment with Bowtie 2

23 August 2017

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Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks

23 August 2017

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AnimalTFDB: a comprehensive animal transcription factor database

23 August 2017

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Increased expression of transcription factor TFAP2α correlates with chemosensitivity in advanced bladder cancer

23 August 2017

1 reference

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Distinct expression profiles of p63 variants during urothelial development and bladder cancer progression

23 August 2017

1 reference

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Differential expression analysis for sequence count data

23 August 2017

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Simple combinations of lineage-determining transcription factors prime cis-regulatory elements required for macrophage and B cell identities

23 August 2017

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The Sequence Alignment/Map format and SAMtools

23 August 2017

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The epidermal differentiation-associated Grainyhead gene Get1/Grhl3 also regulates urothelial differentiation

23 August 2017

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TopHat: discovering splice junctions with RNA-Seq

23 August 2017

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Significance analysis of microarrays applied to the ionizing radiation response

23 August 2017

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A cell line from an anaplastic transitional cell carcinoma of human urinary bladder

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5141480

One Hundred and Twenty-Seven Cultured Human Tumor Cell Lines Producing Tumors in Nude Mice23

23 August 2017

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A Prognostic Gene Expression Signature in the Molecular Classification of Chemotherapy-naïve Urothelial Cancer is Predictive of Clinical Outcomes from Neoadjuvant Chemotherapy: A Phase 2 Trial of Dose-dense Methotrexate, Vinblastine, Doxorubicin, an

23 August 2017

1 reference

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Urothelial carcinoma with squamous differentiation: response to chemotherapy and radiation

6 September 2017

1 reference

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Surgical management of bladder urothelial carcinoma with squamous differentiation

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5141480

The acinar regulator Gata6 suppresses KrasG12V-driven pancreatic tumorigenesis in mice

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5141480

EGFR as a potential therapeutic target for a subset of muscle-invasive bladder cancers presenting a basal-like phenotype

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5141480

Intrinsic basal and luminal subtypes of muscle-invasive bladder cancer

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5141480

Identification of ELF3 as an early transcriptional regulator of human urothelium

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5141480

Kruppel-like factor 5 is required for formation and differentiation of the bladder urothelium

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5141480

FOXA1 and IRF-1 intermediary transcriptional regulators of PPARgamma-induced urothelial cytodifferentiation

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5141480

Activation of peroxisome proliferator-activated receptor-gamma reverses squamous metaplasia and induces transitional differentiation in normal human urothelial cells

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5141480

Molecular regulation of urothelial renewal and host defenses during infection with uropathogenic Escherichia coli

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5141480

A molecular taxonomy for urothelial carcinoma.

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5141480

Human Bladder Carcinoma: Characterization of Two New Tumor Cell Lines and Search for Tumor Viruses23

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5141480

A Human Tissue Culture Cell Line from a Transitional Cell Tumour of the Urinary Bladder: Growth, Chromosome Pattern and Ultrastructure

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5141480

Independent component analysis uncovers the landscape of the bladder tumor transcriptome and reveals insights into luminal and basal subtypes

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5141480

UM-UC-1 and UM-UC-2: characterization of two new human transitional cell carcinoma lines

26 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5141480

Established cell line of urinary bladder carcinoma (T24) containing tumour-specific antigen.

26 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5141480

Improved growth of human urothelial carcinoma cell cultures.

26 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5141480

Mesenchymal-epithelial interactions: technical considerations

26 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5141480

A cell line (SCABER) derived from squamous cell carcinoma of the human urinary bladder

26 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5141480

Comprehensive Transcriptional Analysis of Early-Stage Urothelial Carcinoma.

26 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5141480

Effects of PPAR agonists on proliferation and differentiation in human urothelium

2 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5141480

Classification of microarrays to nearest centroids.

2 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5141480

2 September 2018

1 reference

https://pubmed.ncbi.nlm.nih.gov/27924948

12 December 2020

inferred from PubMed ID database lookup

Differential expression of GATA-3 in urothelial carcinoma variants

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/27924948

12 December 2020

inferred from PubMed ID database lookup

Cultivation, characterization, and identification of human tumor cells with emphasis on kidney, testis, and bladder tumors

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/27924948

12 December 2020

inferred from PubMed ID database lookup

Identifiers

DOI

10.1038/SREP38531

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27924948%20AND%20SRC:MED&resulttype=core&format=json

Dimensions Publication ID

7 June 2020

0 references

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27924948%20AND%20SRC:MED&resulttype=core&format=json

7 June 2020

1 reference