Chromatin architecture and transcription factor binding regulate expression of erythrocyte membrane protein genes (Q37374740)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19687298%20AND%20SRC:MED&resulttype=core&format=json

5 February 2020

title

Chromatin architecture and transcription factor binding regulate expression of erythrocyte membrane protein genes (English)

1 reference

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5 February 2020

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3

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5 February 2020

author name string

Laurie A Steiner

1

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5 February 2020

Yelena Maksimova

2

1 reference

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5 February 2020

Clara Wong

4

1 reference

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5 February 2020

Debasish Raha

5

1 reference

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5 February 2020

Milind C Mahajan

6

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5 February 2020

Sherman M Weissman

7

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5 February 2020

Patrick G Gallagher

8

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5 February 2020

language of work or name

English

0 references

publication date

17 August 2009

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Molecular and Cellular Biology

5 February 2020

published in

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5 February 2020

volume

29

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5 February 2020

page(s)

5399-5412

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5 February 2020

issue

20

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Alternative pre-mRNA splicing switches modulate gene expression in late erythropoiesis.

5 February 2020

cites work

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6 September 2017

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RNA polymerase is poised for activation across the genome

6 September 2017

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6 September 2017

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Activator-mediated recruitment of the MLL2 methyltransferase complex to the beta-globin locus.

6 September 2017

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Genome-wide analyses reveal properties of redundant and specific promoter occupancy within the ETS gene family

6 September 2017

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Intergenic transcription, cell-cycle and the developmentally regulated epigenetic profile of the human beta-globin locus

6 September 2017

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Identification of an OCT4 and SRY regulatory module using integrated computational and experimental genomics approaches

6 September 2017

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Single-stranded DNA-binding proteins regulate the abundance of LIM domain and LIM domain-binding proteins

6 September 2017

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Analysis of the vertebrate insulator protein CTCF-binding sites in the human genome

6 September 2017

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Friend of GATA-1-independent transcriptional repression: a novel mode of GATA-1 function

6 September 2017

1 reference

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Expression of GATA-1 in a non-hematopoietic cell line induces beta-globin locus control region chromatin structure remodeling and an erythroid pattern of gene expression

6 September 2017

1 reference

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Differential sensitivities of transcription factor target genes underlie cell type-specific gene expression profiles.

6 September 2017

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Distinct functions of dispersed GATA factor complexes at an endogenous gene locus

6 September 2017

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Establishment and regulation of chromatin domains: mechanistic insights from studies of hemoglobin synthesis.

6 September 2017

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Unbiased location analysis of E2F1-binding sites suggests a widespread role for E2F1 in the human genome

6 September 2017

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Brain-specific promoter and polyadenylation sites of the beta-adducin pre-mRNA generate an unusually long 3'-UTR.

6 September 2017

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ETO2 coordinates cellular proliferation and differentiation during erythropoiesis

6 September 2017

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Chromatin domain activation via GATA-1 utilization of a small subset of dispersed GATA motifs within a broad chromosomal region

6 September 2017

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6 September 2017

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Genomic mapping of RNA polymerase II reveals sites of co-transcriptional regulation in human cells

6 September 2017

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6 September 2017

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6 September 2017

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A high-resolution map of active promoters in the human genome

6 September 2017

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6 September 2017

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6 September 2017

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Differential requirements for the activation domain and FOG-interaction surface of GATA-1 in megakaryocyte gene expression and development

6 September 2017

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Sequences downstream of the erythroid promoter are required for high level expression of the human alpha-spectrin gene

6 September 2017

1 reference

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Combining phylogenetic and hidden Markov models in biosequence analysis

6 September 2017

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Multiple interactions between regulatory regions are required to stabilize an active chromatin hub.

6 September 2017

1 reference

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SCL: from the origin of hematopoiesis to stem cells and leukemia

6 September 2017

1 reference

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Coregulator-dependent facilitation of chromatin occupancy by GATA-1.

6 September 2017

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Context-dependent regulation of GATA-1 by friend of GATA-1.

6 September 2017

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Regulation of erythrocyte membrane protein gene expression

6 September 2017

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Alternative 5' exons and differential splicing regulate expression of protein 4.1R isoforms with distinct N-termini.

6 September 2017

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Long-range chromatin regulatory interactions in vivo

6 September 2017

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Active genes are tri-methylated at K4 of histone H3

6 September 2017

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Integration and diversity of the regulatory network composed of Maf and CNC families of transcription factors

6 September 2017

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Erythroid expression of the human alpha-spectrin gene promoter is mediated by GATA-1- and NF-E2-binding proteins

6 September 2017

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6 September 2017

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GATA-1 binding sites mapped in the beta-globin locus by using mammalian chIp-chip analysis

6 September 2017

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Isolating human transcription factor targets by coupling chromatin immunoprecipitation and CpG island microarray analysis

6 September 2017

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Transitions in distinct histone H3 methylation patterns at the heterochromatin domain boundaries

6 September 2017

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Genomic organization of mouse and human erythrocyte tropomodulin genes encoding the pointed end capping protein for the actin filaments

6 September 2017

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Conserved noncoding sequences are reliable guides to regulatory elements.

6 September 2017

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Methylation of histone H3 at lysine 4 is highly conserved and correlates with transcriptionally active nuclei in Tetrahymena

6 September 2017

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Analysis of the NuRD subunits reveals a histone deacetylase core complex and a connection with DNA methylation

6 September 2017

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Promoter-associated pausing in promoter architecture and postinitiation transcriptional regulation

6 September 2017

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Physical and functional interactions between the transactivation domain of the hematopoietic transcription factor NF-E2 and WW domains

6 September 2017

1 reference

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CREB-binding protein cooperates with transcription factor GATA-1 and is required for erythroid differentiation

6 September 2017

1 reference

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An alternate promoter directs expression of a truncated, muscle-specific isoform of the human ankyrin 1 gene

6 September 2017

1 reference

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A lineage-selective knockout establishes the critical role of transcription factor GATA-1 in megakaryocyte growth and platelet development

6 September 2017

1 reference

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The world according to Maf

6 September 2017

1 reference

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The LIM-only protein Lmo2 is a bridging molecule assembling an erythroid, DNA-binding complex which includes the TAL1, E47, GATA-1 and Ldb1/NLI proteins

6 September 2017

1 reference

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Arrest in primitive erythroid cell development caused by promoter-specific disruption of the GATA-1 gene

6 September 2017

1 reference

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Essential role of NF-E2 in remodeling of chromatin structure and transcriptional activation of the epsilon-globin gene in vivo by 5' hypersensitive site 2 of the beta-globin locus control region

6 September 2017

1 reference

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NF-E2 disrupts chromatin structure at human beta-globin locus control region hypersensitive site 2 in vitro

6 September 2017

1 reference

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Erythroid transcription factor NF-E2 is a haematopoietic-specific basic-leucine zipper protein

6 September 2017

1 reference

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Regulation of transcription by dimerization of erythroid factor NF-E2 p45 with small Maf proteins

6 September 2017

1 reference

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Novel insights into erythroid development revealed through in vitro differentiation of GATA-1 embryonic stem cells

6 September 2017

1 reference

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Development of hematopoietic cells lacking transcription factor GATA-1

6 September 2017

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Characterization of glycophorin A transcripts: control by the common erythroid-specific promoter and alternative usage of different polyadenylation signals

6 September 2017

1 reference

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Association of erythroid transcription factors: complexes involving the LIM protein RBTN2 and the zinc-finger protein GATA1

6 September 2017

1 reference

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Two chicken erythrocyte band 3 mRNAs are generated by alternative transcriptional initiation and differential RNA splicing

6 September 2017

1 reference

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Globin gene regulation and switching: circa 1990.

6 September 2017

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Postinitiation transcriptional control in Drosophila melanogaster

6 September 2017

1 reference

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Erythroid differentiation in chimaeric mice blocked by a targeted mutation in the gene for transcription factor GATA-1

6 September 2017

1 reference

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Identification of GATA-1 and NF-E2 Binding Sites in the Flanking Regions of the Human Alpha-Globin Genes

6 September 2017

1 reference

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Rescue of erythroid development in gene targeted GATA-1- mouse embryonic stem cells

6 September 2017

1 reference

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Formation of a tissue-specific histone acetylation pattern by the hematopoietic transcription factor GATA-1.

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2756878

Conserved elements containing NF-E2 and tandem GATA binding sites are required for erythroid-specific chromatin structure reorganization within the human beta-globin locus control region

14 September 2017

1 reference

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Direct cloning of DNA that interacts in vivo with a specific protein: application to RNA polymerase II and sites of pausing in Drosophila

14 September 2017

1 reference

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The transcriptional program controlled by the stem cell leukemia gene Scl/Tal1 during early embryonic hematopoietic development.

14 September 2017

1 reference

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Transcriptional enhancement by GATA1-occupied DNA segments is strongly associated with evolutionary constraint on the binding site motif.

14 September 2017

1 reference

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Exchange of GATA factors mediates transitions in looped chromatin organization at a developmentally regulated gene locus

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2756878

Differential GATA factor stabilities: implications for chromatin occupancy by structurally similar transcription factors

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2756878

Induced expression of the transcription of tropomodulin 1 by Wnt5a and characterization of the tropomodulin 1 promoter

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2756878

Dissecting molecular steps in chromatin domain activation during hematopoietic differentiation.

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2756878

Long-range chromosomal interactions regulate the timing of the transition between poised and active gene expression

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2756878

Experimental validation of predicted mammalian erythroid cis-regulatory modules

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2756878

ETO-2 associates with SCL in erythroid cells and megakaryocytes and provides repressor functions in erythropoiesis

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2756878

Proximity among distant regulatory elements at the beta-globin locus requires GATA-1 and FOG-1.

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2756878

Globin gene activation during haemopoiesis is driven by protein complexes nucleated by GATA-1 and GATA-2.

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2756878

SCL assembles a multifactorial complex that determines glycophorin A expression.

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2756878

Human myeloid leukemia cell lines: a review

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2756878

Profile of histone lysine methylation across transcribed mammalian chromatin

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2756878

The histone modification pattern of active genes revealed through genome-wide chromatin analysis of a higher eukaryote

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2756878

Distinguishing regulatory DNA from neutral sites

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2756878

The human ankyrin-1 gene is selectively transcribed in erythroid cell lines despite the presence of a housekeeping-like promoter

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2756878

NF-E2 and GATA binding motifs are required for the formation of DNase I hypersensitive site 4 of the human beta-globin locus control region.

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2756878

Complex developmental patterns of histone modifications associated with the human beta-globin switch in primary cells.

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2756878

Locus control region mediated regulation of adult beta-globin gene expression

26 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2756878

Mouse erythrocyte tropomodulin in the brain reported by lacZ knocked-in downstream from the E1 promoter

26 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2756878

Beta-globin active chromatin Hub formation in differentiating erythroid cells and in p45 NF-E2 knock-out mice

26 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2756878

A human beta-spectrin gene promoter directs high level expression in erythroid but not muscle or neural cells.

26 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2756878

Enhancer requirement for histone methylation linked with gene activation

26 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2756878

In vivo dual cross-linking for identification of indirect DNA-associated proteins by chromatin immunoprecipitation.

2 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2756878

Genome-wide analyses reveal RNA polymerase II located upstream of genes poised for rapid response upon S. cerevisiae stationary phase exit.

2 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2756878

Role of Ras signaling in erythroid differentiation of mouse fetal liver cells: functional analysis by a flow cytometry-based novel culture system

2 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2756878

In vivo formation of a human beta-globin locus control region core element requires binding sites for multiple factors including GATA-1, NF-E2, erythroid Kruppel-like factor, and Sp1.

2 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2756878

A minimal ankyrin promoter linked to a human gamma-globin gene demonstrates erythroid specific copy number dependent expression with minimal position or enhancer dependence in transgenic mice.

2 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2756878

Growth and differentiation of human stem cell factor/erythropoietin-dependent erythroid progenitor cells in vitro.

2 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2756878

Conserved E boxes function as part of the enhancer in hypersensitive site 2 of the beta-globin locus control region. Role of basic helix-loop-helix proteins.

2 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2756878

Rat kidney band 3 Cl-/HCO3- exchanger mRNA is transcribed from an alternative promoter.

2 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2756878

Circulating hematopoietic progenitor cells in a fetus with alpha thalassemia: comparison with the cells circulating in normal and non-thalassemic anemia fetuses and implications for in utero transplantations

2 September 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/19687298

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Characterization of multiple isoforms of protein 4.1R expressed during erythroid terminal differentiation

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/19687298

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Use of altered specificity mutants to probe a specific protein-protein interaction in differentiation: the GATA-1:FOG complex

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/19687298

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1128/MCB.00777-09

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19687298%20AND%20SRC:MED&resulttype=core&format=json

5 February 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19687298%20AND%20SRC:MED&resulttype=core&format=json

5 February 2020

1 reference