Integration of genome-wide approaches identifies lncRNAs of adult neural stem cells and their progeny in vivo. (Q36871546)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23583100%20AND%20SRC:MED&resulttype=core&format=json

28 February 2020

title

Integration of genome-wide approaches identifies lncRNAs of adult neural stem cells and their progeny in vivo (English)

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28 February 2020

0 references

1 reference

8

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28 February 2020

Daniel A Lim

9

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28 February 2020

author name string

Alexander D Ramos

1

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28 February 2020

Aaron Diaz

2

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28 February 2020

Ryan N Delgado

4

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28 February 2020

Ki-Youb Park

5

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28 February 2020

Gabriel Gonzales-Roybal

6

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28 February 2020

Michael C Oldham

7

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28 February 2020

Abhinav Nellore

3

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28 February 2020

language of work or name

English

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publication date

11 April 2013

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28 February 2020

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28 February 2020

volume

12

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issue

5

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28 February 2020

page(s)

616-628

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Orchestrating transcriptional control of adult neurogenesis

28 February 2020

cites work

1 reference

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Targeted RNA sequencing reveals the deep complexity of the human transcriptome

29 September 2017

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The long noncoding RNA Six3OS acts in trans to regulate retinal development by modulating Six3 activity

29 September 2017

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The noncoding RNA Mistral activates Hoxa6 and Hoxa7 expression and stem cell differentiation by recruiting MLL1 to chromatin

29 September 2017

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Integrative annotation of human large intergenic noncoding RNAs reveals global properties and specific subclasses

29 September 2017

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Genome-wide maps of histone modifications unwind in vivo chromatin states of the hair follicle lineage

29 September 2017

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lincRNAs act in the circuitry controlling pluripotency and differentiation

29 September 2017

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Transcriptional programs in transient embryonic zones of the cerebral cortex defined by high-resolution mRNA sequencing

29 September 2017

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29 September 2017

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Extensive and coordinated transcription of noncoding RNAs within cell-cycle promoters

29 September 2017

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Lake-front property: a unique germinal niche by the lateral ventricles of the adult brain

29 September 2017

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A long noncoding RNA maintains active chromatin to coordinate homeotic gene expression

29 September 2017

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In vivo cell-autonomous transcriptional abnormalities revealed in mice expressing mutant huntingtin in striatal but not cortical neurons

29 September 2017

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29 September 2017

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A large intergenic noncoding RNA induced by p53 mediates global gene repression in the p53 response

29 September 2017

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Long noncoding RNA as modular scaffold of histone modification complexes

29 September 2017

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High-resolution analysis of parent-of-origin allelic expression in the mouse brain

29 September 2017

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Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation

29 September 2017

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Ab initio reconstruction of cell type-specific transcriptomes in mouse reveals the conserved multi-exonic structure of lincRNAs

29 September 2017

1 reference

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GREAT improves functional interpretation of cis-regulatory regions

29 September 2017

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Long noncoding RNAs in neuronal-glial fate specification and oligodendrocyte lineage maturation

29 September 2017

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Systematic analysis, comparison, and integration of disease based human genetic association data and mouse genetic phenotypic information

29 September 2017

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Balanced gene regulation by an embryonic brain ncRNA is critical for adult hippocampal GABA circuitry

29 September 2017

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Many human large intergenic noncoding RNAs associate with chromatin-modifying complexes and affect gene expression

29 September 2017

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The glial nature of embryonic and adult neural stem cells

29 September 2017

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Simultaneous prospective purification of adult subventricular zone neural stem cells and their progeny.

29 September 2017

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29 September 2017

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Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

29 September 2017

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Chromatin remodelling factor Mll1 is essential for neurogenesis from postnatal neural stem cells

29 September 2017

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New meaning in the message: noncoding RNAs and their role in retinal development

29 September 2017

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29 September 2017

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Chromatin signatures in multipotent human hematopoietic stem cells indicate the fate of bivalent genes during differentiation

29 September 2017

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29 September 2017

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29 September 2017

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Geometric interpretation of gene coexpression network analysis

29 September 2017

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Long noncoding RNAs in mouse embryonic stem cell pluripotency and differentiation

29 September 2017

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Specific expression of long noncoding RNAs in the mouse brain

29 September 2017

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A transcriptome database for astrocytes, neurons, and oligodendrocytes: a new resource for understanding brain development and function

29 September 2017

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The Mouse Genome Database (MGD): mouse biology and model systems

29 September 2017

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UTX and JMJD3 are histone H3K27 demethylases involved in HOX gene regulation and development

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3662805

CPC: assess the protein-coding potential of transcripts using sequence features and support vector machine.

29 September 2017

1 reference

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Genome-wide maps of chromatin state in pluripotent and lineage-committed cells

29 September 2017

1 reference

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Genome-wide atlas of gene expression in the adult mouse brain

29 September 2017

1 reference

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The Evf-2 noncoding RNA is transcribed from the Dlx-5/6 ultraconserved region and functions as a Dlx-2 transcriptional coactivator

29 September 2017

1 reference

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A bivalent chromatin structure marks key developmental genes in embryonic stem cells

29 September 2017

1 reference

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In vivo transcriptional profile analysis reveals RNA splicing and chromatin remodeling as prominent processes for adult neurogenesis

29 September 2017

1 reference

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Gene set enrichment analysis: a knowledge-based approach for interpreting genome-wide expression profiles

29 September 2017

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Phenotypic and functional characterization of adult brain neuropoiesis

29 September 2017

1 reference

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EGF converts transit-amplifying neurogenic precursors in the adult brain into multipotent stem cells

29 September 2017

1 reference

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BLAT—The BLAST-Like Alignment Tool

29 September 2017

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Translating the Histone Code

29 September 2017

1 reference

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Dlx genes encode DNA-binding proteins that are expressed in an overlapping and sequential pattern during basal ganglia differentiation

29 September 2017

1 reference

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In vivo analysis of Ascl1 defined progenitors reveals distinct developmental dynamics during adult neurogenesis and gliogenesis.

29 September 2017

1 reference

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The bHLH transcription factors OLIG2 and OLIG1 couple neuronal and glial subtype specification.

4 September 2018

1 reference

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10.1016/J.STEM.2013.03.003

4 September 2018

Identifiers

DOI

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23583100%20AND%20SRC:MED&resulttype=core&format=json

28 February 2020

1 reference

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28 February 2020

PubMed publication ID

23583100

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23583100%20AND%20SRC:MED&resulttype=core&format=json