Evaluating the core microbiota in complex communities: A systematic investigation (Q36247053)

13 August 2017

Evaluating the core microbiota in complex communities: A systematic investigation (English)

1 reference

13 August 2017

Carmen Astudillo-García

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28078754%20AND%20SRC:MED&resulttype=core&format=json

9 June 2020

James J. Bell

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28078754%20AND%20SRC:MED&resulttype=core&format=json

9 June 2020

Nicole Webster

3

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28078754%20AND%20SRC:MED&resulttype=core&format=json

9 June 2020

Bettina Glasl

4

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28078754%20AND%20SRC:MED&resulttype=core&format=json

9 June 2020

Jose M. Montoya

6

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28078754%20AND%20SRC:MED&resulttype=core&format=json

9 June 2020

author name string

Jamaluddin Jompa

5

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28078754%20AND%20SRC:MED&resulttype=core&format=json

9 June 2020

Michael W Taylor

7

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28078754%20AND%20SRC:MED&resulttype=core&format=json

9 June 2020

publication date

12 January 2017

1 reference

Environmental Microbiology

13 August 2017

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28078754%20AND%20SRC:MED&resulttype=core&format=json

9 June 2020

volume

19

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28078754%20AND%20SRC:MED&resulttype=core&format=json

9 June 2020

issue

4

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28078754%20AND%20SRC:MED&resulttype=core&format=json

9 June 2020

page(s)

1450-1462

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28078754%20AND%20SRC:MED&resulttype=core&format=json

The coral core microbiome identifies rare bacterial taxa as ubiquitous endosymbionts

9 June 2020

cites work

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.13647

Enterotypes of the human gut microbiome

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.13647

Defining a healthy human gut microbiome: current concepts, future directions, and clinical applications

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.13647

Disentangling the web of life

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.13647

Resilience to disturbance despite limited dispersal and self-recruitment in tropical barrel sponges: implications for conservation and management

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.13647

Characterization of the Core and Caste-Specific Microbiota in the Termite, Reticulitermes flavipes.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.13647

Deciphering microbial interactions and detecting keystone species with co-occurrence networks

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.13647

Specificity and temporal dynamics of complex bacteria--sponge symbiotic interactions.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.13647

Measuring specialization in species interaction networks

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.13647

Specialization, constraints, and conflicting interests in mutualistic networks

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.13647

Insights into the Coral Microbiome: Underpinning the Health and Resilience of Reef Ecosystems.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.13647

An Ordination of the Upland Forest Communities of Southern Wisconsin

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.13647

Associations between species and groups of sites: indices and statistical inference.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.13647

QIIME allows analysis of high-throughput community sequencing data

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.13647

Influence of environmental variation on symbiotic bacterial communities of two temperate sponges

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.13647

Discordant temporal development of bacterial phyla and the emergence of core in the fecal microbiota of young children

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.13647

The ecology of the microbiome: Networks, competition, and stability.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.13647

Greengenes, a chimera-checked 16S rRNA gene database and workbench compatible with ARB

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.13647

The gut bacteria of insects: nonpathogenic interactions

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.13647

A method for detecting modules in quantitative bipartite networks

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.13647

Search and clustering orders of magnitude faster than BLAST

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.13647

UPARSE: highly accurate OTU sequences from microbial amplicon reads

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.13647

A specific mix of generalists: bacterial symbionts in Mediterranean Ircinia spp.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.13647

Metagenomic and small-subunit rRNA analyses reveal the genetic diversity of bacteria, archaea, fungi, and viruses in soil

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.13647

Statistical structure of host-phage interactions

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.13647

Quality or quantity: is nutrient transfer driven more by symbiont identity and productivity than by symbiont abundance?

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.13647

The microbiome of coral surface mucus has a key role in mediating holobiont health and survival upon disturbance.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.13647

Microbial community profiling for human microbiome projects: Tools, techniques, and challenges

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.13647

Molecular evidence for a uniform microbial community in sponges from different oceans

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.13647

Genomic insights into the marine sponge microbiome

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.13647

A core human microbiome as viewed through 16S rRNA sequence clusters

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.13647

Ecological networks--beyond food webs.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.13647

HoloVir: A Workflow for Investigating the Diversity and Function of Viruses in Invertebrate Holobionts

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.13647

Worlds within worlds: evolution of the vertebrate gut microbiota

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.13647

UniFrac: a new phylogenetic method for comparing microbial communities

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.13647

Defining the core Arabidopsis thaliana root microbiome

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.13647

Explaining the excess of rare species in natural species abundance distributions

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.13647

The Biological Observation Matrix (BIOM) format or: how I learned to stop worrying and love the ome-ome

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.13647

Sponge-associated bacteria are strictly maintained in two closely related but geographically distant sponge hosts

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.13647

Functional group diversity increases with modularity in complex food webs

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.13647

Ecological networks and their fragility

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.13647

The winnowing: establishing the squid-vibrio symbiosis

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.13647

Identifying the core microbial community in the gut of fungus-growing termites.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.13647

Reduced diversity and high sponge abundance on a sedimented Indo-Pacific reef system: implications for future changes in environmental quality

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.13647

Biogeographic patterns in below-ground diversity in New York City's Central Park are similar to those observed globally.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.13647

Host-specificity among abundant and rare taxa in the sponge microbiome

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.13647

Microbial ecology of the gastrointestinal tract

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.13647

Introducing mothur: open-source, platform-independent, community-supported software for describing and comparing microbial communities

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.13647

Assessing the complex sponge microbiota: core, variable and species-specific bacterial communities in marine sponges

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.13647

Relationships between host phylogeny, host type and bacterial community diversity in cold-water coral reef sponges

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.13647

The reproductive tracts of two malaria vectors are populated by a core microbiome and by gender- and swarm-enriched microbial biomarkers

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.13647

Bottomless barrel-sponge species in the Indo-Pacific?

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.13647

Beyond the Venn diagram: the hunt for a core microbiome

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.13647

Functional and phylogenetic assembly of microbial communities in the human microbiome

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.13647

Thermal stress responses in the bacterial biosphere of the Great Barrier Reef sponge, Rhopaloeides odorabile

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.13647

Sponge-specific clusters revisited: a comprehensive phylogeny of sponge-associated microorganisms

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.13647

Environmental and ecological factors that shape the gut bacterial communities of fish: a meta-analysis

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.13647

Sponge-associated microorganisms: evolution, ecology, and biotechnological potential

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.13647

'Sponge-specific' bacteria are widespread (but rare) in diverse marine environments

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.13647

Stability of ecological communities and the architecture of mutualistic and trophic networks

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.13647

Diversity, structure and convergent evolution of the global sponge microbiome

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.13647

The human microbiome project

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.13647

Characterizing the avian gut microbiota: membership, driving influences, and potential function

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.13647

High-throughput sequencing reveals the core gut microbiome of Bar-headed goose (Anser indicus) in different wintering areas in Tibet

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.13647

Sponge disease: a global threat?

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.13647

21 January 2018

The Sponge Hologenome

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.13647

The core root microbiome of sugarcanes cultivated under varying nitrogen fertilizer application

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.13647

Stream microbial diversity in response to environmental changes: review and synthesis of existing research

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.13647

Mongolians core gut microbiota and its correlation with seasonal dietary changes

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.13647

A spongin-boring a-proteobacterium is the etiological agent of disease in the Great Barrier Reef sponge Rhopaloeides odorabile

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.13647

21 January 2018

Identifiers

DOI

10.1111/1462-2920.13647

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28078754%20AND%20SRC:MED&resulttype=core&format=json

9 June 2020

1 reference