Introducing mothur: open-source, platform-independent, community-supported software for describing and comparing microbial communities (Q24647611)

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9 February 2020

title

Introducing mothur: open-source, platform-independent, community-supported software for describing and comparing microbial communities (English)

1 reference

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9 February 2020

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13

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9 February 2020

Patrick D. Schloss

1

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9 February 2020

Martin Hartmann

5

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9 February 2020

Donovan H Parks

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9 February 2020

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Blaz Stres

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9 February 2020

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Emily B Hollister

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9 February 2020

author name string

Sarah L Westcott

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9 February 2020

Thomas Ryabin

3

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9 February 2020

Justine R Hall

4

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9 February 2020

Ryan A Lesniewski

7

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9 February 2020

Brian B Oakley

8

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9 February 2020

Courtney J Robinson

10

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9 February 2020

Jason W Sahl

11

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9 February 2020

David J Van Horn

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9 February 2020

Carolyn F Weber

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9 February 2020

language of work or name

English

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publication date

2 October 2009

1 reference

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Applied and Environmental Microbiology

9 February 2020

published in

1 reference

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9 February 2020

volume

75

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9 February 2020

page(s)

7537-7541

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9 February 2020

issue

23

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A core gut microbiome in obese and lean twins

9 February 2020

cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2786419

SILVA: a comprehensive online resource for quality checked and aligned ribosomal RNA sequence data compatible with ARB

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2786419

Microbial diversity in the deep sea and the underexplored "rare biosphere"

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2786419

Culture-independent identification of microorganisms that respond to specified stimuli

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2786419

The Ribosomal Database Project: improved alignments and new tools for rRNA analysis

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2786419

The human microbiome project

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2786419

Greengenes, a chimera-checked 16S rRNA gene database and workbench compatible with ARB

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2786419

Cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2786419

UniFrac: a new phylogenetic method for comparing microbial communities

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2786419

ARB: a software environment for sequence data

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2786419

Introducing DOTUR, a computer program for defining operational taxonomic units and estimating species richness

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2786419

UniFrac--an online tool for comparing microbial community diversity in a phylogenetic context

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2786419

NAST: a multiple sequence alignment server for comparative analysis of 16S rRNA genes

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2786419

Reproducible community dynamics of the gastrointestinal microbiota following antibiotic perturbation

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2786419

Molecular characterization of the diversity and distribution of a thermal spring microbial community by using rRNA and metabolic genes

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2786419

Community structure analyses are more sensitive to differences in soil bacterial communities than anonymous diversity indices

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2786419

Introducing SONS, a tool for operational taxonomic unit-based comparisons of microbial community memberships and structures

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2786419

Introducing TreeClimber, a test to compare microbial community structures

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2786419

Integration of microbial ecology and statistics: a test to compare gene libraries

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2786419

Phylogenetic approaches for describing and comparing the diversity of microbial communities

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2786419

Quantitative comparisons of 16S rRNA gene sequence libraries from environmental samples

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2786419

Molecular analysis of bacterial community structure and diversity in unimproved and improved upland grass pastures

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2786419

Evaluating different approaches that test whether microbial communities have the same structure.

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2786419

NULL MODELS FOR THE NUMBER OF EVOLUTIONARY STEPS IN A CHARACTER ON A PHYLOGENETIC TREE.

28 November 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/19801464

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1128/AEM.01541-09

2 references

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19801464%20AND%20SRC:MED&resulttype=core&format=json

f2eda5e9-dfb4-3d95-8ab4-a6518eb0fe2e

9 February 2020

ADS bibcode

2009ApEnM..75.7537S

0 references

Mendeley publication ID

1 reference

https://www.mendeley.com/catalogue/f2eda5e9-dfb4-3d95-8ab4-a6518eb0fe2e/

title

Introducing mothur: Open-source, ... preview & related info | Mendeley (British English)

9 October 2022

1 reference

2 references

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19801464%20AND%20SRC:MED&resulttype=core&format=json

9 February 2020

2 references