Correlation between binding rate constants and individual information of E. coli Fis binding sites (Q36059538)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:17617646%20AND%20SRC:MED&resulttype=core&format=json

1 January 2020

title

Correlation between binding rate constants and individual information of E. coli Fis binding sites (English)

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1 January 2020

0 references

4

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1 January 2020

Thomas D Schneider

7

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1 January 2020

author name string

Ryan K Shultzaberger

1

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1 January 2020

Lindsey R Roberts

2

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1 January 2020

Ilya G Lyakhov

3

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1 January 2020

Andrew G Stephen

5

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1 January 2020

Robert J Fisher

6

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language of work or name

English

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publication date

7 July 2007

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1 January 2020

published in

Nucleic Acids Research

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volume

35

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1 January 2020

issue

16

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1 January 2020

page(s)

5275-5283

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Survey of the year 2005 commercial optical biosensor literature

1 January 2020

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2 October 2017

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2 October 2017

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The P1 phage replication protein RepA contacts an otherwise inaccessible thymine N3 proton by DNA distortion or base flipping

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2 October 2017

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2 October 2017

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2 October 2017

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Affinity analysis of non-steady-state data obtained under mass transport limited conditions using BIAcore technology

2 October 2017

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Information analysis of human splice site mutations

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2 October 2017

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Information analysis of Fis binding sites

2 October 2017

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Sequence walkers: a graphical method to display how binding proteins interact with DNA or RNA sequences

2 October 2017

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Variable structures of Fis-DNA complexes determined by flanking DNA-protein contacts

2 October 2017

1 reference

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Quantitative analysis of ribosome binding sites in E.coli

2 October 2017

1 reference

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Real-time DNA binding measurements of the ETS1 recombinant oncoproteins reveal significant kinetic differences between the p42 and p51 isoforms

2 October 2017

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Use of the ‘Perceptron’ algorithm to distinguish translational initiation sites inE. coli

2 October 2017

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Information content of binding sites on nucleotide sequences

2 October 2017

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Selection of DNA binding sites by regulatory proteins

2 October 2017

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Sequence logos: a new way to display consensus sequences

2 October 2017

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The molecular structure of wild-type and a mutant Fis protein: relationship between mutational changes and recombinational enhancer function or DNA binding

2 October 2017

1 reference

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The promoter of the tgt/sec operon in Escherichia coli is preceded by an upstream activation sequence that contains a high affinity FIS binding site

2 October 2017

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Dramatic changes in Fis levels upon nutrient upshift in Escherichia coli

2 October 2017

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Reading of DNA sequence logos: prediction of major groove binding by information theory.

2 October 2017

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The ndh-binding protein (Nbp) regulates the ndh gene of Escherichia coli in response to growth phase and is identical to Fis.

11 July 2018

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11 July 2018

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11 July 2018

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11 July 2018

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11 July 2018

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11 July 2018

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16 Analysis of equilibrium and kinetic measurements to determine thermodynamic origins of stability and specificity and mechanism of formation of site-specific complexes between proteins and helical DNA

11 July 2018

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Subunit exchange and the role of dimer flexibility in DNA binding by the Fis protein

11 July 2018

1 reference

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Anatomy of Escherichia coli ribosome binding sites.

23 September 2018

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Information content of individual genetic sequences.

23 September 2018

1 reference

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Identification of new Fis binding sites by DNA scission with Fis-1,10-phenanthroline-copper(I) chimeras.

23 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2018646

Improving biosensor analysis

23 September 2018

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12 December 2020

Identifying target sites for cooperatively binding factors

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12 December 2020

Rationalization of gene regulation by a eukaryotic transcription factor: calculation of regulatory region occupancy from predicted binding affinities

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12 December 2020

Mechanism of DNA binding by the ADR1 zinc finger transcription factor as determined by SPR

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12 December 2020

Kinetic studies on Cro repressor-operator DNA interaction

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12 December 2020

The Fis protein: it's not just for DNA inversion anymore

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12 December 2020

Equilibrium analysis of high affinity interactions using BIACORE

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12 December 2020

Identifiers

DOI

10.1093/NAR/GKM471

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:17617646%20AND%20SRC:MED&resulttype=core&format=json

1 January 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:17617646%20AND%20SRC:MED&resulttype=core&format=json

1 January 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:17617646%20AND%20SRC:MED&resulttype=core&format=json