Complex interactions of HIV-1 nucleocapsid protein with oligonucleotides (Q24539163)

1

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Matthew J Fivash

2

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Andrew G Stephen

3

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Nathan A Hagan

4

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Shilpa R Shenoy

5

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Maxine V Medaglia

6

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Lindsey R Smith

7

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Karen M Worthy

8

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John T Simpson

9

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Robert Shoemaker

10

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Karen L McNitt

11

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Donald G Johnson

12

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Catherine V Hixson

13

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Daniele Fabris

15

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Louis E Henderson

16

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Alan Rein

NMR structure of the HIV-1 nucleocapsid protein bound to stem-loop SL2 of the psi-RNA packaging signal. Implications for genome recognition

17

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language of work or name

English

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publication date

2006

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published in

Nucleic Acids Research

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volume

34

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issue

2

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page(s)

472-84

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cites work

1 reference

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Structure of the HIV-1 nucleocapsid protein bound to the SL3 psi-RNA recognition element

24 March 2017

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Rapid measurement of binding constants and heats of binding using a new titration calorimeter

24 March 2017

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RNA is a structural element in retrovirus particles

7 April 2017

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Nucleic acid chaperone activity of HIV-1 nucleocapsid protein: critical role in reverse transcription and molecular mechanism

26 May 2017

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Analysis of nucleic acids by FTICR MS.

27 September 2017

1 reference

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Mechanistic insights into the kinetics of HIV-1 nucleocapsid protein-facilitated tRNA annealing to the primer binding site

27 September 2017

1 reference

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Human immunodeficiency virus type 1 nucleocapsid zn(2+) fingers are required for efficient reverse transcription, initial integration processes, and protection of newly synthesized viral DNA.

27 September 2017

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Deficient dimerization of human immunodeficiency virus type 1 RNA caused by mutations of the u5 RNA sequences

27 September 2017

1 reference

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Specific zinc-finger architecture required for HIV-1 nucleocapsid protein's nucleic acid chaperone function

27 September 2017

1 reference

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HIV-1 nucleocapsid protein as a nucleic acid chaperone: spectroscopic study of its helix-destabilizing properties, structural binding specificity, and annealing activity

27 September 2017

1 reference

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Subtle alterations of the native zinc finger structures have dramatic effects on the nucleic acid chaperone activity of human immunodeficiency virus type 1 nucleocapsid protein

27 September 2017

1 reference

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Role of RNA in facilitating Gag/Gag-Pol interaction

27 September 2017

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Mechanism for nucleic acid chaperone activity of HIV-1 nucleocapsid protein revealed by single molecule stretching.

27 September 2017

1 reference

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Zinc finger structures in the human immunodeficiency virus type 1 nucleocapsid protein facilitate efficient minus- and plus-strand transfer

27 September 2017

1 reference

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Nucleic acid sequence discrimination by the HIV-1 nucleocapsid protein NCp7: a fluorescence study

27 September 2017

1 reference

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Coupled integration of human immunodeficiency virus type 1 cDNA ends by purified integrase in vitro: stimulation by the viral nucleocapsid protein

27 September 2017

1 reference

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The role of Pr55(gag) in the annealing of tRNA3Lys to human immunodeficiency virus type 1 genomic RNA

27 September 2017

1 reference

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The human immunodeficiency virus type 1 Gag polyprotein has nucleic acid chaperone activity: possible role in dimerization of genomic RNA and placement of tRNA on the primer binding site

27 September 2017

1 reference

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Sequence-specific binding of human immunodeficiency virus type 1 nucleocapsid protein to short oligonucleotides

27 September 2017

1 reference

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Binding of the nucleocapsid protein of type 1 human immunodeficiency virus to nucleic acids studied using phosphorescence and optically detected magnetic resonance

27 September 2017

1 reference

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27 September 2017

1 reference

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HIV-1 nucleocapsid protein induces "maturation" of dimeric retroviral RNA in vitro

27 September 2017

1 reference

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The two zinc fingers in the human immunodeficiency virus type 1 nucleocapsid protein are not functionally equivalent

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1351370

Characterization of human immunodeficiency virus type 1 dimeric RNA from wild-type and protease-defective virions

27 September 2017

1 reference

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Formation of stable and functional HIV-1 nucleoprotein complexes in vitro

27 September 2017

1 reference

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Diffusion-controlled macromolecular interactions

27 September 2017

1 reference

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Identification of a U5-specific sequence required for efficient polyadenylation within the human immunodeficiency virus long terminal repeat.

27 September 2017

1 reference

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Conservation of a hairpin ribozyme sequence in HIV-1 is required for efficient viral replication

27 September 2017

1 reference

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Diffusion-driven mechanisms of protein translocation on nucleic acids. 3. The Escherichia coli lac repressor--operator interaction: kinetic measurements and conclusions.

27 September 2017

1 reference

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Direct mass spectrometric determination of the stoichiometry and binding affinity of the complexes between nucleocapsid protein and RNA stem-loop hairpins of the HIV-1 Psi-recognition element

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1351370

The annealing of tRNA3Lys to human immunodeficiency virus type 1 primer binding site is critically dependent on the NCp7 zinc fingers structure

29 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1351370

Properties and growth mechanism of the ordered aggregation of a model RNA by the HIV-1 nucleocapsid protein: an electron microscopy investigation

29 November 2018

1 reference

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Ordered aggregation of ribonucleic acids by the human immunodeficiency virus type 1 nucleocapsid protein.

29 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1351370

Diffusion-driven mechanisms of protein translocation on nucleic acids. 1. Models and theory.

29 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1351370

Ion effects on the lac repressor-operator equilibrium

29 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1351370

Salt dependence of the kinetics of the lac repressor-operator interaction: role of nonoperator deoxyribonucleic acid in the association reaction

29 November 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/16434700

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Diffusion-driven mechanisms of protein translocation on nucleic acids. 2. The Escherichia coli lac repressor-operator interaction: equilibrium measurements

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/16434700

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Nucleic-acid-chaperone activity of retroviral nucleocapsid proteins: significance for viral replication

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/16434700

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1093/NAR/GKJ442

1 reference

2587435

2587435

1 reference

1 reference

1 reference