Quantitative prediction of NF-kappa B DNA-protein interactions (Q24298906)

4 July 2017

Quantitative prediction of NF-kappa B DNA-protein interactions (English)

1 reference

RELA proto-oncogene, NF-kB subunit

4 July 2017

0 references

1 reference

GOA release 2020-03-11

author

Dominic P. Kwiatkowski

series ordinal

4

1 reference

4 July 2017

3

Dawn Field

1 reference

4 July 2017

Irina A Udalova

1

1 reference

PubMed ID

12048232

4 July 2017

Richard Mott

series ordinal

2

1 reference

PubMed ID

12048232

4 July 2017

language of work or name

English

0 references

publication date

4 June 2002

1 reference

Proceedings of the National Academy of Sciences of the United States of America

4 July 2017

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4 July 2017

99

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4 July 2017

8167-8172

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4 July 2017

12

1 reference

TRANSFAC: a database on transcription factors and their DNA binding sites

4 July 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=123039

The p65 subunit is responsible for the strong transcription activating potential of NF-kappa B

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=123039

Selection of optimal kappa B/Rel DNA-binding motifs: interaction of both subunits of NF-kappa B with DNA is required for transcriptional activation

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=123039

Identifying regulatory networks by combinatorial analysis of promoter elements

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=123039

Promoter-specific binding of Rap1 revealed by genome-wide maps of protein-DNA association

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=123039

Genome-wide location and function of DNA binding proteins

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=123039

NF-kappa B and Rel proteins: evolutionarily conserved mediators of immune responses

19 March 2017

2 references

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=123039

19 March 2017

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=123039

Crystal structure of p50/p65 heterodimer of transcription factor NF-kappaB bound to DNA

6 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=123039

Structure of the NF-kappa B p50 homodimer bound to DNA

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=123039

Genomic binding sites of the yeast cell-cycle transcription factors SBF and MBF

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=123039

MatInd and MatInspector: new fast and versatile tools for detection of consensus matches in nucleotide sequence data

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=123039

Virus induction of human IFN beta gene expression requires the assembly of an enhanceosome

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=123039

A predictive model for regulatory sequences directing liver-specific transcription.

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=123039

Massive parallel analysis of the binding specificity of histone-like protein HU to single- and double-stranded DNA with generic oligodeoxyribonucleotide microchips

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=123039

Non-independence of Mnt repressor-operator interaction determined by a new quantitative multiple fluorescence relative affinity (QuMFRA) assay.

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=123039

Exploring the DNA-binding specificities of zinc fingers with DNA microarrays

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=123039

SAMIE: statistical algorithm for modeling interaction energies.

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=123039

The TRANSFAC system on gene expression regulation.

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=123039

Identification of novel, functional genetic variants in the human matrix metalloproteinase-2 gene: role of Sp1 in allele-specific transcriptional regulation

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=123039

Functional consequences of a polymorphism affecting NF-kappaB p50-p50 binding to the TNF promoter region.

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=123039

Experimental analysis and computer prediction of CTF/NFI transcription factor DNA binding sites.

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=123039

Locus control regions: coming of age at a decade plus

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=123039

Cooperative assembly of RNA polymerase II transcription complexes

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=123039

Construction, expression, purification and functional analysis of recombinant NFkappaB p50/p65 heterodimer

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=123039

Complex NF-kappaB interactions at the distal tumor necrosis factor promoter region in human monocytes.

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=123039

Specificity, free energy and information content in protein-DNA interactions

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=123039

Quantitative discrimination of MEF2 sites

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=123039

A polymorphism that affects OCT-1 binding to the TNF promoter region is associated with severe malaria

27 September 2017

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.102674699

A polymorphism of the human matrix gamma-carboxyglutamic acid protein promoter alters binding of an activating protein-1 complex and is associated with altered transcription and serum levels

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.102674699

Targeted disruption of the p50 subunit of NF-kappa B leads to multifocal defects in immune responses

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.102674699

How NF-κB can be attracted by its cognate DNA

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.102674699

21 January 2018

Identifiers

DOI

10.1073/PNAS.102674699

1 reference

4 July 2017

0 references

1 reference

4 July 2017

1 reference

PubMed ID

12048232