The pan-genome of Lactobacillus reuteri strains originating from the pig gastrointestinal tract (Q35857640)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26626322%20AND%20SRC:MED&resulttype=core&format=json

1 March 2020

title

The pan-genome of Lactobacillus reuteri strains originating from the pig gastrointestinal tract (English)

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26626322%20AND%20SRC:MED&resulttype=core&format=json

1 March 2020

main subject

Lactobacillus reuteri

object named as

Lactobacillus reuteri

1 reference

4

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26626322%20AND%20SRC:MED&resulttype=core&format=json

1 March 2020

Stefan Roos

5

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26626322%20AND%20SRC:MED&resulttype=core&format=json

1 March 2020

Nathalie Juge

9

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26626322%20AND%20SRC:MED&resulttype=core&format=json

1 March 2020

author name string

Udo Wegmann

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26626322%20AND%20SRC:MED&resulttype=core&format=json

1 March 2020

Donald A MacKenzie

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26626322%20AND%20SRC:MED&resulttype=core&format=json

1 March 2020

Jinshui Zheng

3

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26626322%20AND%20SRC:MED&resulttype=core&format=json

1 March 2020

David Swarbreck

6

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26626322%20AND%20SRC:MED&resulttype=core&format=json

1 March 2020

Jens Walter

7

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26626322%20AND%20SRC:MED&resulttype=core&format=json

1 March 2020

Lisa C Crossman

8

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26626322%20AND%20SRC:MED&resulttype=core&format=json

1 March 2020

language of work or name

English

0 references

publication date

1 December 2015

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26626322%20AND%20SRC:MED&resulttype=core&format=json

1 March 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26626322%20AND%20SRC:MED&resulttype=core&format=json

1 March 2020

volume

16

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26626322%20AND%20SRC:MED&resulttype=core&format=json

1 March 2020

page(s)

1023

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26626322%20AND%20SRC:MED&resulttype=core&format=json

describes a project that uses

1 March 2020

MUMmer

object named as

MUMmer

1 reference

CZ Software Mentions: A large dataset of software mentions in the biomedical literature

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Gluco-oligomers initially formed by the reuteransucrase enzyme of Lactobacillus reuteri 121 incubated with sucrose and malto-oligosaccharides

11 July 2018

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11 July 2018

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11 July 2018

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Glycerol supplementation enhances L. reuteri's protective effect against S. Typhimurium colonization in a 3-D model of colonic epithelium

11 July 2018

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The application of ecological theory toward an understanding of the human microbiome

11 July 2018

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Fast gapped-read alignment with Bowtie 2

11 July 2018

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IMG: the Integrated Microbial Genomes database and comparative analysis system

11 July 2018

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Structural insight into the role of Streptococcus parasanguinis Fap1 within oral biofilm formation

11 July 2018

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11 July 2018

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11 July 2018

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11 July 2018

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Using OrthoMCL to assign proteins to OrthoMCL-DB groups or to cluster proteomes into new ortholog groups

11 July 2018

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11 July 2018

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11 July 2018

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11 July 2018

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11 July 2018

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11 July 2018

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11 July 2018

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11 July 2018

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11 July 2018

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11 July 2018

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11 July 2018

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11 July 2018

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11 July 2018

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11 July 2018

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11 July 2018

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11 July 2018

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Crystal Structure of a Mucus-binding Protein Repeat Reveals an Unexpected Functional Immunoglobulin Binding Activity

11 July 2018

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trimAl: a tool for automated alignment trimming in large-scale phylogenetic analyses

11 July 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4667477

Prediction of lipoprotein signal peptides in Gram-positive bacteria with a Hidden Markov Model

11 July 2018

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Identification of a Gene Cluster for the Biosynthesis of a Long, Galactose-Rich Exopolysaccharide in Lactobacillus rhamnosus GG and Functional Analysis of the Priming Glycosyltransferase

11 July 2018

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11 July 2018

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Ecological role of lactobacilli in the gastrointestinal tract: implications for fundamental and biomedical research

11 July 2018

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11 July 2018

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11 July 2018

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11 July 2018

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11 July 2018

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11 July 2018

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11 July 2018

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11 July 2018

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The levansucrase and inulosucrase enzymes of Lactobacillus reuteri 121 catalyse processive and non-processive transglycosylation reactions

11 July 2018

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Non-classical protein secretion in bacteria

11 July 2018

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Highly hydrolytic reuteransucrase from probiotic Lactobacillus reuteri strain ATCC 55730.

11 July 2018

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A high-molecular-mass surface protein (Lsp) and methionine sulfoxide reductase B (MsrB) contribute to the ecological performance of Lactobacillus reuteri in the murine gut.

11 July 2018

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Comprehensive analysis of pseudogenes in prokaryotes: widespread gene decay and failure of putative horizontally transferred genes

11 July 2018

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WebLogo: A Sequence Logo Generator

11 July 2018

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SIGI: score-based identification of genomic islands

11 July 2018

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Versatile and open software for comparing large genomes

11 July 2018

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Prediction of lipoprotein signal peptides in Gram-negative bacteria

11 July 2018

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GenDB--an open source genome annotation system for prokaryote genomes

11 July 2018

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Molecular characterization of a novel glucosyltransferase from Lactobacillus reuteri strain 121 synthesizing a unique, highly branched glucan with alpha-(1-->4) and alpha-(1-->6) glucosidic bonds.

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4667477

Pattern searches for the identification of putative lipoprotein genes in Gram-positive bacterial genomes

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4667477

A high-molecular-mass cell-surface protein from Lactobacillus reuteri 1063 adheres to mucus components.

11 July 2018

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Culture-independent analysis of gut bacteria: the pig gastrointestinal tract microbiota revisited

11 July 2018

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Predicting transmembrane protein topology with a hidden Markov model: application to complete genomes

11 July 2018

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TIGRFAMs: a protein family resource for the functional identification of proteins

11 July 2018

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Artemis: sequence visualization and annotation

11 July 2018

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Oriloc: prediction of replication boundaries in unannotated bacterial chromosomes

11 July 2018

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11 July 2018

The Staden package, 1998

1 reference

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Base-calling of automated sequencer traces using phred. II. Error probabilities

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4667477

Gapped BLAST and PSI-BLAST: a new generation of protein database search programs

11 July 2018

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tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence

11 July 2018

2 references

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11 July 2018

https://api.crossref.org/works/10.1186%2FS12864-015-2216-7

Lactobacilli which attach to the crop epithelium of the fowl

21 January 2018

1 reference

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Identification and cloning of a plasmid-encoded erythromycin resistance determinant from Lactobacillus reuteri.

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4667477

Bacteria associated with the gastric epithelium of neonatal pigs

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4667477

Complete genome sequence of Lactobacillus reuteri I5007, a probiotic strain isolated from healthy piglet

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4667477

Both GtfA and GtfB are required for SraP glycosylation in Staphylococcus aureus.

24 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4667477

Genome sequence of the vertebrate gut symbiont Lactobacillus reuteri ATCC 53608.

24 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4667477

Strain-specific diversity of mucus-binding proteins in the adhesion and aggregation properties of Lactobacillus reuteri.

24 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4667477

Characterization of MabA, a modulator of Lactobacillus rhamnosus GG adhesion and biofilm formation.

24 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4667477

Diversification of the gut symbiont Lactobacillus reuteri as a result of host-driven evolution.

24 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4667477

Glucosyltransferase A (GtfA) and inulosucrase (Inu) of Lactobacillus reuteri TMW1.106 contribute to cell aggregation, in vitro biofilm formation, and colonization of the mouse gastrointestinal tract.

24 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4667477

Characterisation and selection of probiotic lactobacilli for a preliminary minipig feeding trial and their effect on serum cholesterol levels, faeces pH and faeces moisture content.

24 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4667477

Identification of a family of streptococcal surface proteins with extremely repetitive structure.

24 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4667477

Methods for the bioinformatic identification of bacterial lipoproteins encoded in the genomes of Gram-positive bacteria

24 September 2018

1 reference

Crossref

https://api.crossref.org/works/10.1186%2FS12864-015-2216-7

Role of Lactobacillus reuteri cell and mucus-binding protein A (CmbA) in adhesion to intestinal epithelial cells and mucus in vitro

21 January 2018

1 reference

Crossref

https://api.crossref.org/works/10.1186%2FS12864-015-2216-7

Surface properties of lactobacilli isolated from the small intestine of pigs

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/26626322

12 December 2020

inferred from PubMed ID database lookup

Association of rat, pig, and fowl biotypes of lactobacilli with the stomach of gnotobiotic mice

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/26626322

12 December 2020

inferred from PubMed ID database lookup

Sucrose utilization and impact of sucrose on glycosyltransferase expression in Lactobacillus reuteri

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/26626322

12 December 2020

inferred from PubMed ID database lookup

Identifiers

DOI

10.1186/S12864-015-2216-7

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26626322%20AND%20SRC:MED&resulttype=core&format=json

release_5porkocp7vg4tao4ou7bdk4rgu

1 March 2020

Fatcat ID

1 reference

Fatcat

https://api.fatcat.wiki/v0/release/5porkocp7vg4tao4ou7bdk4rgu

24 November 2022

mapped directly with Wikidata item

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26626322%20AND%20SRC:MED&resulttype=core&format=json

1 March 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26626322%20AND%20SRC:MED&resulttype=core&format=json