GenDB--an open source genome annotation system for prokaryote genomes (Q39747829)

14 September 2017

GenDB--an open source genome annotation system for prokaryote genomes (English)

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14 September 2017

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1

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14 September 2017

11

Alfred Pühler

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Oliver Rupp

Oliver Rupp

9

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Alexander Goesmann

Alexander Goesmann

2

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Jörn Kalinowski

7

Jörn Kalinowski

1 reference

14 September 2017

Alice Carolyn McHardy

3

Alice C McHardy

1 reference

14 September 2017

4

Daniela Bartels

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14 September 2017

5

Thomas Bekel

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14 September 2017

8

Burkhard Linke

1 reference

14 September 2017

10

Robert Giegerich

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14 September 2017

Jörn Clausen

6

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14 September 2017

language of work or name

English

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publication date

1 April 2003

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14 September 2017

Nucleic Acids Research

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14 September 2017

31

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14 September 2017

2187-2195

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14 September 2017

8

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describes a project that uses

14 September 2017

SQL

1 reference

26 June 2022

https://europepmc.org/article/PMC/PMC153740

based on heuristic

inferred from PubMed Central ID database lookup

cites work

The complete nucleotide sequence and environmental distribution of the cryptic, conjugative, broad-host-range plasmid pIPO2 isolated from bacteria of the wheat rhizosphere

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=153740

The composite genome of the legume symbiont Sinorhizobium meliloti

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=153740

The InterPro database, an integrated documentation resource for protein families, domains and functional sites

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=153740

Artemis: sequence visualization and annotation

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=153740

WIT: integrated system for high-throughput genome sequence analysis and metabolic reconstruction

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=153740

Improved microbial gene identification with GLIMMER

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=153740

CRITICA: coding region identification tool invoking comparative analysis

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=153740

The use of gene clusters to infer functional coupling

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=153740

Profile hidden Markov models

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=153740

Gapped BLAST and PSI-BLAST: a new generation of protein database search programs

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=153740

Identification of prokaryotic and eukaryotic signal peptides and prediction of their cleavage sites

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=153740

tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=153740

SRS--an indexing and retrieval tool for flat file data libraries.

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=153740

Automated assembly of protein blocks for database searching

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=153740

MAGPIE: automated genome interpretation.

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=153740

The 79,370-bp conjugative plasmid pB4 consists of an IncP-1beta backbone loaded with a chromate resistance transposon, the strA-strB streptomycin resistance gene pair, the oxacillinase gene bla(NPS-1), and a tripartite antibiotic efflux system of th

15 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=153740

PathFinder: reconstruction and dynamic visualization of metabolic pathways

20 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=153740

Functional and structural genomics using PEDANT.

20 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=153740

Automated genome sequence analysis and annotation

20 August 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/12682369

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1093/NAR/GKG312

1 reference

14 September 2017

1 reference

14 September 2017

1 reference