Next-generation sequencing facilitates quantitative analysis of wild-type and Nrl(-/-) retinal transcriptomes. (Q35600008)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22162623%20AND%20SRC:MED&resulttype=core&format=json

18 January 2020

title

Next-generation sequencing facilitates quantitative analysis of wild-type and Nrl(-/-) retinal transcriptomes (English)

1 reference

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18 January 2020

0 references

0 references

Matthew J Brooks

1

1 reference

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18 January 2020

Harsha K Rajasimha

series ordinal

2

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18 January 2020

Jerome E Roger

series ordinal

3

1 reference

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18 January 2020

Anand Swaroop

series ordinal

4

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18 January 2020

publication date

23 November 2011

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18 January 2020

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18 January 2020

volume

17

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18 January 2020

page(s)

3034-3054

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Alternative transcription exceeds alternative splicing in generating the transcriptome diversity of cerebellar development

18 January 2020

cites work

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Improving RNA-Seq expression estimates by correcting for fragment bias

27 July 2018

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Length bias correction for RNA-seq data in gene set analyses

27 July 2018

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27 July 2018

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Distinct signature of altered homeostasis in aging rod photoreceptors: implications for retinal diseases

27 July 2018

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27 July 2018

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A mutation in SLC24A1 implicated in autosomal-recessive congenital stationary night blindness

27 July 2018

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27 July 2018

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A mutation in ZNF513, a putative regulator of photoreceptor development, causes autosomal-recessive retinitis pigmentosa

27 July 2018

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Neovascularization, enhanced inflammatory response, and age-related cone dystrophy in the Nrl-/-Grk1-/- mouse retina

27 July 2018

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The genomic, biochemical, and cellular responses of the retina in inherited photoreceptor degenerations and prospects for the treatment of these disorders

27 July 2018

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A comparison of massively parallel nucleotide sequencing with oligonucleotide microarrays for global transcription profiling

27 July 2018

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Photoreceptor degeneration: genetic and mechanistic dissection of a complex trait

27 July 2018

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Computation for ChIP-seq and RNA-seq studies

27 July 2018

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Comprehensive analysis of the pseudogenes of glycolytic enzymes in vertebrates: the anomalously high number of GAPDH pseudogenes highlights a recent burst of retrotrans-positional activity

27 July 2018

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Mutations in a BTB-Kelch protein, KLHL7, cause autosomal-dominant retinitis pigmentosa

27 July 2018

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Structure of cone photoreceptors

27 July 2018

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Fast and accurate short read alignment with Burrows-Wheeler transform

27 July 2018

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TopHat: discovering splice junctions with RNA-Seq

27 July 2018

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Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

27 July 2018

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Comparative analysis of processed ribosomal protein pseudogenes in four mammalian genomes

27 July 2018

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Stimulation of the insulin/mTOR pathway delays cone death in a mouse model of retinitis pigmentosa

27 July 2018

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27 July 2018

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Mapping and quantifying mammalian transcriptomes by RNA-Seq

27 July 2018

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Dynamic repertoire of a eukaryotic transcriptome surveyed at single-nucleotide resolution

27 July 2018

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The complete genome of an individual by massively parallel DNA sequencing

27 July 2018

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Shotgun bisulphite sequencing of the Arabidopsis genome reveals DNA methylation patterning

27 July 2018

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Individual retinal progenitor cells display extensive heterogeneity of gene expression

27 July 2018

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Paired-end mapping reveals extensive structural variation in the human genome

27 July 2018

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A typology of photoreceptor gene expression patterns in the mouse

27 July 2018

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27 July 2018

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Characterization of mutation spectra with ultra-deep pyrosequencing: application to HIV-1 drug resistance

27 July 2018

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Genome-wide mapping of in vivo protein-DNA interactions

27 July 2018

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27 July 2018

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The complete genome sequence of a chronic atrophic gastritis Helicobacter pylori strain: evolution during disease progression

27 July 2018

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Targeting of GFP to newborn rods by Nrl promoter and temporal expression profiling of flow-sorted photoreceptors

27 July 2018

1 reference

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Metagenomics: DNA sequencing of environmental samples.

27 July 2018

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Accurate multiplex polony sequencing of an evolved bacterial genome

27 July 2018

1 reference

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Cone-like morphological, molecular, and electrophysiological features of the photoreceptors of the Nrl knockout mouse

27 July 2018

1 reference

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Photoreceptors of Nrl -/- mice coexpress functional S- and M-cone opsins having distinct inactivation mechanisms

27 July 2018

1 reference

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Altered expression of genes of the Bmp/Smad and Wnt/calcium signaling pathways in the cone-only Nrl-/- mouse retina, revealed by gene profiling using custom cDNA microarrays

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3233386

EST analysis of mouse retina and RPE/choroid cDNA libraries

27 July 2018

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Genomic analysis of mouse retinal development

27 July 2018

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Java Treeview--extensible visualization of microarray data

27 July 2018

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Expression profiling of the developing and mature Nrl-/- mouse retina: identification of retinal disease candidates and transcriptional regulatory targets of Nrl

27 July 2018

1 reference

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Accurate normalization of real-time quantitative RT-PCR data by geometric averaging of multiple internal control genes

27 July 2018

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Analysis of Relative Gene Expression Data Using Real-Time Quantitative PCR and the 2−ΔΔCT Method

27 July 2018

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Profile of the genes expressed in the human peripheral retina, macula, and retinal pigment epithelium determined through serial analysis of gene expression (SAGE).

27 July 2018

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Nrl is required for rod photoreceptor development

27 July 2018

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Primer3 on the WWW for general users and for biologist programmers

27 July 2018

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Cluster analysis and display of genome-wide expression patterns

27 July 2018

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Crx, a novel otx-like homeobox gene, shows photoreceptor-specific expression and regulates photoreceptor differentiation.

27 July 2018

1 reference

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A novel method for real time quantitative RT-PCR.

27 July 2018

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Evolution of the functional human beta-actin gene and its multi-pseudogene family: conservation of noncoding regions and chromosomal dispersion of pseudogenes

27 July 2018

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Defective photoreceptor phagocytosis in a mouse model of enhanced S-cone syndrome causes progressive retinal degeneration

27 July 2018

1 reference

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Next-generation sequencing and epigenome technologies: potential medical applications.

26 September 2018

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Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation

26 September 2018

1 reference

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Genetics of neurodegenerative diseases: insights from high-throughput resequencing

26 September 2018

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Phototransduction motifs and variations

26 September 2018

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Deep sequencing-based expression analysis shows major advances in robustness, resolution and inter-lab portability over five microarray platforms

26 September 2018

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Microarray-based gene expression analysis during retinal maturation of albino rats.

26 September 2018

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Next-generation sequencing transforms today's biology

26 September 2018

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Genome sequencing in microfabricated high-density picolitre reactors

26 September 2018

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Comparative gene expression analysis of murine retina and brain.

26 September 2018

1 reference

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Global gene expression analysis of the developing postnatal mouse retina

26 September 2018

1 reference

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Gene expression variation in the adult human retina

26 September 2018

1 reference

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Identification of novel genes preferentially expressed in the retina using a custom human retina cDNA microarray.

26 September 2018

1 reference

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Comprehensive analysis of photoreceptor gene expression and the identification of candidate retinal disease genes

26 September 2018

1 reference

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Quantitation of RNA using the polymerase chain reaction

26 September 2018

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26 September 2018

Identifiers

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22162623%20AND%20SRC:MED&resulttype=core&format=json

18 January 2020

1 reference