In vivo targeting of de novo DNA methylation by histone modifications in yeast and mouse. (Q35545732)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25848745%20AND%20SRC:MED&resulttype=core&format=json

4 March 2020

title

In vivo targeting of de novo DNA methylation by histone modifications in yeast and mouse (English)

1 reference

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4 March 2020

0 references

1

1 reference

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4 March 2020

Barbara Montanini

3

1 reference

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4 March 2020

Roberto Ferrari

5

1 reference

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4 March 2020

Kai Fu

6

1 reference

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4 March 2020

Matteo Pellegrini

12

1 reference

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4 March 2020

10

Simone Ottonello

1 reference

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4 March 2020

author name string

William A Pastor

2

1 reference

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4 March 2020

Kevin Nee

4

1 reference

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4 March 2020

Giancarlo Bonora

7

1 reference

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4 March 2020

Liudmilla Rubbi

8

1 reference

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4 March 2020

Amander T Clark

9

1 reference

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4 March 2020

Steven E Jacobsen

11

1 reference

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4 March 2020

language of work or name

English

0 references

publication date

7 April 2015

1 reference

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4 March 2020

1 reference

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4 March 2020

volume

4

1 reference

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4 March 2020

page(s)

e06205

1 reference

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describes a project that uses

4 March 2020

DESeq2

object named as

DEseq

1 reference

CZ Software Mentions: A large dataset of software mentions in the biomedical literature

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12 July 2018

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12 July 2018

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12 July 2018

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A set of genes critical to development is epigenetically poised in mouse germ cells from fetal stages through completion of meiosis.

12 July 2018

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De novo DNA methylation in the male germ line occurs by default but is excluded at sites of H3K4 methylation.

12 July 2018

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TETonic shift: biological roles of TET proteins in DNA demethylation and transcription

12 July 2018

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High-resolution DNA methylome analysis of primordial germ cells identifies gender-specific reprogramming in mice

12 July 2018

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DNA methylation: roles in mammalian development

12 July 2018

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The dynamics of genome-wide DNA methylation reprogramming in mouse primordial germ cells

12 July 2018

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Linking DNA methyltransferases to epigenetic marks and nucleosome structure genome-wide in human tumor cells

12 July 2018

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Reprogramming DNA methylation in the mammalian life cycle: building and breaking epigenetic barriers

12 July 2018

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Mechanism for epigenetic variegation of gene expression at yeast telomeric heterochromatin

12 July 2018

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12 July 2018

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Cancer genetics and epigenetics: two sides of the same coin?

12 July 2018

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A map of nucleosome positions in yeast at base-pair resolution

12 July 2018

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Reorganization of the host epigenome by a viral oncogene

12 July 2018

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Understanding the language of Lys36 methylation at histone H3.

12 July 2018

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Contribution of intragenic DNA methylation in mouse gametic DNA methylomes to establish oocyte-specific heritable marks

12 July 2018

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Single cell analysis facilitates staging of Blimp1-dependent primordial germ cells derived from mouse embryonic stem cells.

12 July 2018

1 reference

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Comparative methylomics reveals gene-body H3K36me3 in Drosophila predicts DNA methylation and CpG landscapes in other invertebrates.

12 July 2018

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Dynamic CpG island methylation landscape in oocytes and preimplantation embryos

12 July 2018

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12 July 2018

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Differential expression analysis for sequence count data

12 July 2018

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Genome-wide mapping of nucleosomes in yeast

12 July 2018

1 reference

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Quantitative interaction proteomics and genome-wide profiling of epigenetic histone marks and their readers

12 July 2018

1 reference

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The Dnmt3a PWWP domain reads histone 3 lysine 36 trimethylation and guides DNA methylation

12 July 2018

1 reference

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Relationship between nucleosome positioning and DNA methylation

12 July 2018

1 reference

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Conservation and divergence of methylation patterning in plants and animals

12 July 2018

1 reference

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Chromatin methylation activity of Dnmt3a and Dnmt3a/3L is guided by interaction of the ADD domain with the histone H3 tail

12 July 2018

1 reference

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Establishing, maintaining and modifying DNA methylation patterns in plants and animals

12 July 2018

1 reference

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Histone H3 lysine 36 methyltransferase Hypb/Setd2 is required for embryonic vascular remodeling

12 July 2018

1 reference

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Genome-wide erasure of DNA methylation in mouse primordial germ cells is affected by AID deficiency.

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4412109

The N-terminus of histone H3 is required for de novo DNA methylation in chromatin

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4412109

Human DNA methylomes at base resolution show widespread epigenomic differences

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4412109

Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4412109

Transcription is required for establishment of germline methylation marks at imprinted genes

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4412109

Analyzing real-time PCR data by the comparative C(T) method

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4412109

DNMT3L connects unmethylated lysine 4 of histone H3 to de novo methylation of DNA

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4412109

In vitro reprogramming of fibroblasts into a pluripotent ES-cell-like state

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4412109

High-efficiency yeast transformation using the LiAc/SS carrier DNA/PEG method

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4412109

Gene body-specific methylation on the active X chromosome

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4412109

Characterization of Arabidopsis thaliana methyl-CpG-binding domain (MBD) proteins

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4412109

PCR-synthesis of marker cassettes with long flanking homology regions for gene disruptions in S. cerevisiae

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4412109

The helical periodicity of DNA on the nucleosome

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4412109

In vivo epigenomic profiling of germ cells reveals germ cell molecular signatures

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4412109

DANPOS: dynamic analysis of nucleosome position and occupancy by sequencing

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4412109

Preparation of yeast RNA.

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4412109

Preparation of yeast DNA.

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4412109

De novo methylation of MMLV provirus in embryonic stem cells: CpG versus non-CpG methylation

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4412109

Chromosomal Instability and Tumors Promoted by DNA Hypomethylation

26 September 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/25848745

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.7554/ELIFE.06205

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25848745%20AND%20SRC:MED&resulttype=core&format=json

4 March 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25848745%20AND%20SRC:MED&resulttype=core&format=json

4 March 2020

1 reference