BS-Seeker2: a versatile aligning pipeline for bisulfite sequencing data (Q30691137)

15 October 2017

BS-Seeker2: a versatile aligning pipeline for bisulfite sequencing data (English)

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15 October 2017

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Weilong Guo

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Matteo Pellegrini

object named as

Matteo Pellegrini

8

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author name string

Petko Fiziev

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15 October 2017

Weihong Yan

3

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15 October 2017

Shawn Cokus

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15 October 2017

Xueguang Sun

5

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15 October 2017

Michael Q Zhang

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15 October 2017

Pao-Yang Chen

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15 October 2017

language of work or name

English

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publication date

10 November 2013

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15 October 2017

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15 October 2017

14

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15 October 2017

774

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https://scigraph.springernature.com/pub.10.1186/1471-2164-14-774

15 October 2017

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cites work

Double restriction-enzyme digestion improves the coverage and accuracy of genome-wide CpG methylation profiling by reduced representation bisulfite sequencing.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3840619

BRAT-BW: efficient and accurate mapping of bisulfite-treated reads

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3840619

Integrative Genomics Viewer (IGV): high-performance genomics data visualization and exploration

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3840619

Fast gapped-read alignment with Bowtie 2

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3840619

RRBSMAP: a fast, accurate and user-friendly alignment tool for reduced representation bisulfite sequencing

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3840619

Sperm methylation profiles reveal features of epigenetic inheritance and evolution in primates

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3840619

MethylCoder: software pipeline for bisulfite-treated sequences

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3840619

Bismark: a flexible aligner and methylation caller for Bisulfite-Seq applications.

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3840619

BS Seeker: precise mapping for bisulfite sequencing

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3840619

Fast and SNP-tolerant detection of complex variants and splicing in short reads

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3840619

Human DNA methylomes at base resolution show widespread epigenomic differences

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3840619

Updates to the RMAP short-read mapping software

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3840619

BSMAP: whole genome bisulfite sequence MAPping program

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3840619

Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3840619

Genome-scale DNA methylation maps of pluripotent and differentiated cells

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3840619

Using quality scores and longer reads improves accuracy of Solexa read mapping

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3840619

Shotgun bisulphite sequencing of the Arabidopsis genome reveals DNA methylation patterning

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3840619

SOAP: short oligonucleotide alignment program

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3840619

Galaxy: a platform for interactive large-scale genome analysis

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3840619

14 July 2018

Identifiers

DOI

10.1186/1471-2164-14-774

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Dimensions Publication ID

15 October 2017

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9 September 2019

https://scigraph.springernature.com/pub.10.1186/1471-2164-14-774

1 reference

15 October 2017

1 reference