Insights from genomes of representatives of the human gut commensal Bifidobacterium bifidum (Q35530043)

8 August 2017

Insights from genomes of representatives of the human gut commensal Bifidobacterium bifidum (English)

1 reference

8 August 2017

Bifidobacterium bifidum

Bifidobacterium bifidum

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13

Douwe van Sinderen

1 reference

8 August 2017

Christian Milani

2

0 references

Marta Mangifesta

Marta Mangifesta

9

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Francesca Turroni

Francesca Turroni

4

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Gabriele Andrea Lugli

Gabriele Andrea Lugli

3

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Sabrina Duranti

Sabrina Duranti

1

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Borja Sanchez

Borja Sanchez

6

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Marco Ventura

Marco Ventura

14

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Miguel Gueimonde

Miguel Gueimonde

11

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Abelardo Margolles

Abelardo Margolles

12

0 references

Alice Viappiani

8

Alice Viappiani

1 reference

8 August 2017

5

Leonardo Mancabelli

1 reference

8 August 2017

Chiara Ferrario

7

1 reference

PubMed ID

25523018

8 August 2017

Walter Mancino

10

1 reference

PubMed ID

25523018

8 August 2017

language of work or name

1 reference

14 February 2015

1 reference

Environmental Microbiology

8 August 2017

1 reference

8 August 2017

17

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8 August 2017

2515-2531

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8 August 2017

7

1 reference

Basic local alignment search tool

8 August 2017

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12743

Differential expression analysis for sequence count data

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12743

CRISPR Provides Acquired Resistance Against Viruses in Prokaryotes

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12743

Interactomics in the human intestine: Lactobacilli and Bifidobacteria make a difference

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12743

Comparative genomics of the genus Bifidobacterium

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12743

The transporter classification (TC) system, 2002

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12743

The Carbohydrate-Active EnZymes database (CAZy): an expert resource for Glycogenomics

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12743

Detecting recombination in evolving nucleotide sequences

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12743

Using the miraEST assembler for reliable and automated mRNA transcript assembly and SNP detection in sequenced ESTs

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12743

Structural and dynamic properties of bacterial type IV secretion systems (review).

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12743

Development of bacterial and bifidobacterial communities in feces of newborn babies.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12743

Genetic analysis and morphological identification of pilus-like structures in members of the genus Bifidobacterium

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12743

The Structure and Functions of Xyloglucan

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12743

GC-Profile: a web-based tool for visualizing and analyzing the variation of GC content in genomic sequences

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12743

Identification of protein coding regions by database similarity search

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12743

Role of extracellular transaldolase from Bifidobacterium bifidum in mucin adhesion and aggregation.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12743

CRISPRFinder: a web tool to identify clustered regularly interspaced short palindromic repeats

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12743

Genome sequence of the immunomodulatory strain Bifidobacterium bifidum LMG 13195

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12743

Murein lytic enzyme TgaA of Bifidobacterium bifidum MIMBb75 modulates dendritic cell maturation through its cysteine- and histidine-dependent amidohydrolase/peptidase (CHAP) amidase domain

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12743

A Simple, Fast, and Accurate Algorithm to Estimate Large Phylogenies by Maximum Likelihood

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12743

Extensive set of 16S rRNA-based probes for detection of bacteria in human feces

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12743

Whole-genome prokaryotic phylogeny

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12743

Prodigal: prokaryotic gene recognition and translation initiation site identification

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12743

Succession of microbial consortia in the developing infant gut microbiome

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12743

Comparative genomic analysis of the gut bacterium Bifidobacterium longum reveals loci susceptible to deletion during pure culture growth

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12743

Fast and accurate short read alignment with Burrows-Wheeler transform

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12743

tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12743

Investigation of the evolutionary development of the genus Bifidobacterium by comparative genomics

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12743

GCUA: general codon usage analysis

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12743

Comparative study of bacterial groups within the human cecal and fecal microbiota

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12743

Genomic encyclopedia of type strains of the genus Bifidobacterium

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12743

Cooperation of β-galactosidase and β-N-acetylhexosaminidase from bifidobacteria in assimilation of human milk oligosaccharides with type 2 structure

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12743

Functional genome analysis of Bifidobacterium breve UCC2003 reveals type IVb tight adherence (Tad) pili as an essential and conserved host-colonization factor

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12743

eggNOG v4.0: nested orthology inference across 3686 organisms

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12743

Finished bacterial genomes from shotgun sequence data

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12743

REBASE--a database for DNA restriction and modification: enzymes, genes and genomes

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12743

Examination of faecal Bifidobacterium populations in breast- and formula-fed infants during the first 18 months of life.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12743

Artemis: sequence visualization and annotation

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12743

The genome sequence of Bifidobacterium longum reflects its adaptation to the human gastrointestinal tract

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12743

Flexible boosting of accelerated failure time models.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12743

A metagenomic study of diet-dependent interaction between gut microbiota and host in infants reveals differences in immune response.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12743

Bifidobacterial utilization of human milk oligosaccharides

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12743

The genome sequence of Bifidobacterium longum subsp. infantis reveals adaptations for milk utilization within the infant microbiome

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12743

ISfinder: the reference centre for bacterial insertion sequences

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12743

Exploring the diversity of the bifidobacterial population in the human intestinal tract

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12743

Genome analysis of Bifidobacterium bifidum PRL2010 reveals metabolic pathways for host-derived glycan foraging

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12743

Genetic strategies for mucin metabolism in Bifidobacterium bifidum PRL2010: an example of possible human-microbe co-evolution

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12743

Global genome transcription profiling of Bifidobacterium bifidum PRL2010 under in vitro conditions and identification of reference genes for quantitative real-time PCR

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12743

Ability of Bifidobacterium breve to grow on different types of milk: exploring the metabolism of milk through genome analysis

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12743

Diversity of bifidobacteria within the infant gut microbiota

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12743

Role of sortase-dependent pili of Bifidobacterium bifidum PRL2010 in modulating bacterium-host interactions

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12743

Bifidobacterium bifidum as an example of a specialized human gut commensal

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12743

Expression of sortase-dependent pili of Bifidobacterium bifidum PRL2010 in response to environmental gut conditions

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12743

Bifidobacterium bifidum PRL2010 modulates the host innate immune response

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12743

Comparative metagenomics and population dynamics of the gut microbiota in mother and infant

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12743

Specific identification and targeted characterization of Bifidobacterium lactis from different environmental isolates by a combined multiplex-PCR approach

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12743

Genomics as a means to understand bacterial phylogeny and ecological adaptation: the case of bifidobacteria.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12743

Genomics of Actinobacteria: tracing the evolutionary history of an ancient phylum

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12743

The Bifidobacterium dentium Bd1 genome sequence reflects its genetic adaptation to the human oral cavity

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12743

Analyses of bifidobacterial prophage-like sequences.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12743

Score-based prediction of genomic islands in prokaryotic genomes using hidden Markov models.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12743

Complete genome sequence of the probiotic bacterium Bifidobacterium bifidum strain BGN4.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12743

Diversification of the Salmonella fimbriae: a model of macro- and microevolution

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12743

PGAP: pan-genomes analysis pipeline

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12743

Complete genome sequence of Bifidobacterium bifidum S17

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12743

21 January 2018

Identifiers

DOI

10.1111/1462-2920.12743

1 reference

8 August 2017

1 reference

PubMed ID

25523018