The Bifidobacterium dentium Bd1 genome sequence reflects its genetic adaptation to the human oral cavity (Q33521289)

27 July 2017

The Bifidobacterium dentium Bd1 genome sequence reflects its genetic adaptation to the human oral cavity (English)

1 reference

27 July 2017

Bifidobacterium dentium

Bifidobacterium dentium

1 reference

1 reference

Fei He

9

0 references

Marcus J Claesson

Marcus J Claesson

8

0 references

Carlos Canchaya

Carlos Canchaya

7

0 references

Francesca Turroni

Francesca Turroni

2

0 references

Alberto Ferrarini

Alberto Ferrarini

12

0 references

Francesca Bottacini

Francesca Bottacini

6

0 references

Aldert Zomer

Aldert Zomer

3

0 references

Ziding Zhang

Ziding Zhang

19

0 references

Marco Ventura

Marco Ventura

1

0 references

Paul W O'Toole

Paul W O'Toole

22

0 references

Marco R. Oggioni

Marco Oggioni

17

0 references

Bernard Henrissat

15

Bernard Henrissat

1 reference

27 July 2017

23

Douwe van Sinderen

1 reference

27 July 2017

Elena Foroni

4

1 reference

27 July 2017

Vanessa Giubellini

5

1 reference

27 July 2017

Maria Mantzourani

10

1 reference

27 July 2017

Laura Mulas

11

1 reference

27 July 2017

Beile Gao

13

1 reference

27 July 2017

Massimo Delledonne

14

1 reference

27 July 2017

Pedro Coutinho

16

1 reference

27 July 2017

Radhey S Gupta

18

1 reference

27 July 2017

David Beighton

20

1 reference

27 July 2017

Gerald F Fitzgerald

21

1 reference

27 July 2017

24 December 2009

1 reference

27 July 2017

1 reference

27 July 2017

5

1 reference

27 July 2017

e1000785

1 reference

27 July 2017

12

1 reference

Creative Commons Attribution 4.0 International

27 July 2017

start time

24 December 2009

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

describes a project that uses

MUMmer

MUMmer

1 reference

CZ Software Mentions: A large dataset of software mentions in the biomedical literature

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21 June 2018

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Comparative genomic analysis of the gut bacterium Bifidobacterium longum reveals loci susceptible to deletion during pure culture growth

21 June 2018

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21 June 2018

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Genomics of Actinobacteria: tracing the evolutionary history of an ancient phylum

21 June 2018

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CRISPR Provides Acquired Resistance Against Viruses in Prokaryotes

21 June 2018

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Genome of the opportunistic pathogen Streptococcus sanguinis

21 June 2018

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21 June 2018

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Genomics as a means to understand bacterial phylogeny and ecological adaptation: the case of bifidobacteria.

21 June 2018

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Burkholderia xenovorans LB400 harbors a multi-replicon, 9.73-Mbp genome shaped for versatility

21 June 2018

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21 June 2018

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Sequence analyses of fimbriae subunit FimA proteins on Actinomyces naeslundii genospecies 1 and 2 and Actinomyces odontolyticus with variant carbohydrate binding specificities

21 June 2018

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A putative RNA-interference-based immune system in prokaryotes: computational analysis of the predicted enzymatic machinery, functional analogies with eukaryotic RNAi, and hypothetical mechanisms of action

21 June 2018

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Towards understanding molecular modes of probiotic action

21 June 2018

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A pneumococcal pilus influences virulence and host inflammatory responses

21 June 2018

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Adherence molecules of pathogenic pneumococci

21 June 2018

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Human antimicrobial peptides: defensins, cathelicidins and histatins

21 June 2018

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The complex oral microflora of high-risk individuals and groups and its role in the caries process

21 June 2018

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Getting better with bifidobacteria

21 June 2018

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Molecular analysis of human oral microbiota.

21 June 2018

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Host-bacterial mutualism in the human intestine

21 June 2018

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Selection-driven transcriptome polymorphism in Escherichia coli/Shigella species

21 June 2018

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Escherichia coli glutamate- and arginine-dependent acid resistance systems increase internal pH and reverse transmembrane potential

21 June 2018

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Whole-genome prokaryotic phylogeny

21 June 2018

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Bifidobacterium lactis DSM 10140: identification of the atp (atpBEFHAGDC) operon and analysis of its genetic structure, characteristics, and phylogeny

21 June 2018

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Platelet aggregation induced by serotype polysaccharides from Streptococcus mutans.

21 June 2018

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Comparison of Campylobacter jejuni isolates implicated in Guillain-Barré syndrome and strains that cause enteritis by a DNA microarray

21 June 2018

1 reference

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Analysis of loci required for determination of serotype antigenicity in Streptococcus mutans and its clinical utilization

21 June 2018

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A Genomic View of the Human-Bacteroides thetaiotaomicron Symbiosis

21 June 2018

1 reference

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Analysis of genome plasticity in pathogenic and commensal Escherichia coli isolates by use of DNA arrays

21 June 2018

1 reference

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Gut flora in health and disease

21 June 2018

1 reference

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Genome sequence of Streptococcus mutans UA159, a cariogenic dental pathogen

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2788695

The genome sequence of Bifidobacterium longum reflects its adaptation to the human gastrointestinal tract

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2788695

Probiotics: an overview of beneficial effects.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2788695

Invasion of dentinal tubules by oral bacteria.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2788695

Evolutionary genomics of Salmonella: gene acquisitions revealed by microarray analysis

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2788695

Identification of genes that are associated with DNA repeats in prokaryotes

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2788695

Genome sequence and analysis of the oral bacterium Fusobacterium nucleatum strain ATCC 25586

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2788695

Molecular analysis of bacterial species associated with childhood caries

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2788695

The Fap1 fimbrial adhesin is a glycoprotein: antibodies specific for the glycan moiety block the adhesion of Streptococcus parasanguis in an in vitro tooth model

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2788695

Identification of independent Streptococcus gordonii SspA and SspB functions in coaggregation with Actinomyces naeslundii

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2788695

Genetics of acid adaptation in oral streptococci

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2788695

Actinomyces naeslundii fimbrial protein Orf977 shows similarity to a streptococcal adhesin

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2788695

Evolutionary genomics of Staphylococcus aureus: insights into the origin of methicillin-resistant strains and the toxic shock syndrome epidemic

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2788695

FUGUE: sequence-structure homology recognition using environment-specific substitution tables and structure-dependent gap penalties

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2788695

Evidence for symmetric chromosomal inversions around the replication origin in bacteria

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2788695

Molecular analysis of commensal host-microbial relationships in the intestine

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2788695

Comparative phage genomics and the evolution of Siphoviridae: insights from dairy phages

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2788695

A whole-genome microarray reveals genetic diversity among Helicobacter pylori strains

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2788695

Characterization of heat, oxidative, and acid stress responses in Brucella melitensis.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2788695

Role of serotype-specific polysaccharide in the resistance of Streptococcus mutans to phagocytosis by human polymorphonuclear leukocytes

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2788695

21 June 2018

The Staden package, 1998

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2788695

A novel gene required for rhamnose-glucose polysaccharide synthesis in Streptococcus mutans

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2788695

Genomic-sequence comparison of two unrelated isolates of the human gastric pathogen Helicobacter pylori

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2788695

In vitro models that support adhesion specificity in biofilms of oral bacteria

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2788695

Base-calling of automated sequencer traces using phred. II. Error probabilities

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2788695

The complete genome sequence of the gram-positive bacterium Bacillus subtilis

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2788695

Structure, function and immunogenicity of streptococcal antigen I/II polypeptides

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2788695

Salivary mucins in oral mucosal defense

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2788695

Inactivation of the gene encoding surface protein SspA in Streptococcus gordonii DL1 affects cell interactions with human salivary agglutinin and oral actinomyces.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2788695

Microbial ecology of dental plaque and its significance in health and disease

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2788695

Specific inhibition of adsorption of Actinomyces viscosus T14V to saliva-treated hydroxyapatite by antibody against type 1 fimbriae

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2788695

Tooth surface-pellicle lipids and their role in the protection of dental enamel against lactic-acid diffusion in man.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2788695

Human salivary acidic proline-rich proteins and statherin promote the attachment of Actinomyces viscosus LY7 to apatitic surfaces

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2788695

Primary sequence of the Escherichia coli fadL gene encoding an outer membrane protein required for long-chain fatty acid transport

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2788695

Proteolytic activity of Streptococcus mutans (GS-5)

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2788695

Differential Utilization of Proteins in Saliva from Caries-active and Caries-free Subjects as Growth Substrates by Plaque-forming Streptococci

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2788695

Mechanisms of action of probiotics in intestinal diseases.

21 June 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PGEN.1000785

Gram-positive rods prevailing in teeth with apical periodontitis undergoing root canal treatment.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PGEN.1000785

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PGEN.1000785

Bifidobacterium catenulatum, Bifidobacterium dentium, and Bifidobacterium angulatum: Three New Species and Their Deoxyribonucleic Acid Homology Relationships

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PGEN.1000785

Biological significance of a family of regularly spaced repeats in the genomes of Archaea, Bacteria and mitochondria.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PGEN.1000785

Analysis of bifidobacterial evolution using a multilocus approach

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PGEN.1000785

Proteome analysis of Streptococcus mutans metabolic phenotype during acid tolerance

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PGEN.1000785

Tandem genes encode cell-surface polypeptides SspA and SspB which mediate adhesion of the oral bacterium Streptococcus gordonii to human and bacterial receptors.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PGEN.1000785

Molecular and clinical analyses of the gene encoding the collagen-binding adhesin of Streptococcus mutans.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PGEN.1000785

Altered adherence properties of a Streptococcus gordonii hppA (oligopeptide permease) mutant result from transcriptional effects on cshA adhesin gene expression.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PGEN.1000785

Occurrence of the family bifidobacteriaceae in human dental caries and plaque

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PGEN.1000785

Diversity of the genus Lactobacillus revealed by comparative genomics of five species

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PGEN.1000785

Comparative analysis of CRISPR loci in lactic acid bacteria genomes.

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2788695

Dental caries: risk assessment and treatment solutions for an elderly population

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2788695

The IUBMB-Endorsed Transporter Classification System

31 October 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PGEN.1000785

Substituted-cysteine accessibility method

21 January 2018

1 reference

12 December 2020

Solution structure and dynamics of LuxU from Vibrio harveyi, a phosphotransferase protein involved in bacterial quorum sensing

1 reference

12 December 2020

Predominant obligate anaerobes in human carious dentin

1 reference

12 December 2020

The final pH of bacteria comprising the predominant flora on sound and carious human root and enamel surfaces

1 reference

12 December 2020

The isolation of bifidobacteria from occlusal carious lesions in children and adults

1 reference

12 December 2020

The broad diversity of neutral and sialylated oligosaccharides derived from human salivary mucins

1 reference

12 December 2020

Characterization of the functional replication origin of Mycobacterium tuberculosis

1 reference

12 December 2020

Factors determining the degree of anaerobiosis of Bifidobacterium strains

1 reference

12 December 2020

Acid-induced acid tolerance and acidogenicity of non-mutans streptococci

1 reference

12 December 2020

The microbiota of young children from tooth and tongue samples

1 reference

12 December 2020

Measurement of pH in human dental plaque in vivo with an ion-sensitive transistor electrode

1 reference

12 December 2020

Distribution of salivary Lactobacillus and Bifidobacterium species in periodontal health and disease

1 reference

12 December 2020

10.1371/JOURNAL.PGEN.1000785

Identifiers

DOI

1 reference

27 July 2017

1 reference

27 July 2017

1 reference