The contribution of cohesin-SA1 to gene expression and chromatin architecture in two murine tissues (Q35237045)

7 August 2017

The contribution of cohesin-SA1 to gene expression and chromatin architecture in two murine tissues (English)

1 reference

7 August 2017

5

Ana Losada

1 reference

7 August 2017

Ana Cuadrado

1

0 references

David G. Pisano

object named as

David G Pisano

series ordinal

4

0 references

author name string

Silvia Remeseiro

series ordinal

2

1 reference

PubMed ID

25735743

7 August 2017

Osvaldo Graña

series ordinal

3

1 reference

PubMed ID

25735743

7 August 2017

language of work or name

English

0 references

publication date

3 March 2015

1 reference

7 August 2017

Nucleic Acids Research

1 reference

7 August 2017

43

1 reference

7 August 2017

6

1 reference

7 August 2017

3056-3067

1 reference

Creative Commons Attribution-NonCommercial 4.0 International

7 August 2017

start time

10 November 2016

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

describes a project that uses

limma

1 reference

22 June 2022

https://europepmc.org/article/PMC/4381060

based on heuristic

inferred from PubMed Central ID database lookup

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Clustering of tissue-specific sub-TADs accompanies the regulation of HoxA genes in developing limbs

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Cohesin and CTCF differentially affect chromatin architecture and gene expression in human cells

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Cohesin-mediated interactions organize chromosomal domain architecture

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Recurrent inactivation of STAG2 in bladder cancer is not associated with aneuploidy.

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Cohesin-based chromatin interactions enable regulated gene expression within preexisting architectural compartments

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Recurrent mutations in multiple components of the cohesin complex in myeloid neoplasms

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Reduction of Nipbl impairs cohesin loading locally and affects transcription but not cohesion-dependent functions in a mouse model of Cornelia de Lange Syndrome

13 July 2018

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Architectural protein subclasses shape 3D organization of genomes during lineage commitment

13 July 2018

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The genomic landscape of cohesin-associated chromatin interactions

13 July 2018

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Genome-wide control of RNA polymerase II activity by cohesin

13 July 2018

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CTCF and cohesin: linking gene regulatory elements with their targets

13 July 2018

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The hierarchy of the 3D genome

13 July 2018

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Functional implications of genome topology.

13 July 2018

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CTCF/cohesin-mediated DNA looping is required for protocadherin α promoter choice

13 July 2018

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Robust 4C-seq data analysis to screen for regulatory DNA interactions.

13 July 2018

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The long-range interaction landscape of gene promoters

13 July 2018

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Transcription factors: from enhancer binding to developmental control

13 July 2018

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Cohesin regulates tissue-specific expression by stabilizing highly occupied cis-regulatory modules

13 July 2018

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A map of the cis-regulatory sequences in the mouse genome

13 July 2018

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Role of CCCTC binding factor (CTCF) and cohesin in the generation of single-cell diversity of protocadherin-α gene expression

13 July 2018

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Spatial partitioning of the regulatory landscape of the X-inactivation centre

13 July 2018

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Topological domains in mammalian genomes identified by analysis of chromatin interactions

13 July 2018

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A unique role of cohesin-SA1 in gene regulation and development

13 July 2018

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Cohesin-SA1 deficiency drives aneuploidy and tumourigenesis in mice due to impaired replication of telomeres

13 July 2018

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Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks

13 July 2018

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ChromHMM: automating chromatin-state discovery and characterization

13 July 2018

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Extensive promoter-centered chromatin interactions provide a topological basis for transcription regulation

13 July 2018

1 reference

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Mutational inactivation of STAG2 causes aneuploidy in human cancer

13 July 2018

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Identification of the cluster control region for the protocadherin-beta genes located beyond the protocadherin-gamma cluster

13 July 2018

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CTCF-mediated functional chromatin interactome in pluripotent cells

13 July 2018

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CCCTC-binding factor (CTCF) and cohesin influence the genomic architecture of the Igh locus and antisense transcription in pro-B cells

13 July 2018

1 reference

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Mapping and analysis of chromatin state dynamics in nine human cell types

13 July 2018

1 reference

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Mediator and cohesin connect gene expression and chromatin architecture

13 July 2018

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PeakAnalyzer: genome-wide annotation of chromatin binding and modification loci.

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4381060

Essential role of p18Hamlet/SRCAP-mediated histone H2A.Z chromatin incorporation in muscle differentiation

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4381060

A CTCF-independent role for cohesin in tissue-specific transcription

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4381060

Cell type specificity of chromatin organization mediated by CTCF and cohesin.

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4381060

BEDTools: a flexible suite of utilities for comparing genomic features

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4381060

The Sanger FASTQ file format for sequences with quality scores, and the Solexa/Illumina FASTQ variants

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4381060

Cohesin is required for higher-order chromatin conformation at the imprinted IGF2-H19 locus

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4381060

Cohesin: its roles and mechanisms

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4381060

Comprehensive mapping of long-range interactions reveals folding principles of the human genome

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4381060

Multiple organ system defects and transcriptional dysregulation in the Nipbl(+/-) mouse, a model of Cornelia de Lange Syndrome

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4381060

The Sequence Alignment/Map format and SAMtools

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4381060

Transcriptional dysregulation in NIPBL and cohesin mutant human cells

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4381060

Cohesins form chromosomal cis-interactions at the developmentally regulated IFNG locus

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4381060

Architectural roles of multiple chromatin insulators at the human apolipoprotein gene cluster

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4381060

Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4381060

Model-based analysis of ChIP-Seq (MACS)

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4381060

CTCF physically links cohesin to chromatin

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4381060

Cohesins functionally associate with CTCF on mammalian chromosome arms

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4381060

Cohesin mediates transcriptional insulation by CCCTC-binding factor

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4381060

Protocadherin family: diversity, structure, and function

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4381060

Nuclear organization of the genome and the potential for gene regulation

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4381060

Effects of sister chromatid cohesion proteins on cut gene expression during wing development in Drosophila

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4381060

Drosophila nipped-B protein supports sister chromatid cohesion and opposes the stromalin/Scc3 cohesion factor to facilitate long-range activation of the cut gene

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4381060

Characterization of vertebrate cohesin complexes and their regulation in prophase

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4381060

Identification and characterization of SA/Scc3p subunits in the Xenopus and human cohesin complexes

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4381060

Structure, chromosomal localization and expression of mouse genes encoding type III Reg, RegIII alpha, RegIII beta, RegIII gamma

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4381060

Human pancreatitis-associated protein. Messenger RNA cloning and expression in pancreatic diseases

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4381060

CTCF is required for neural development and stochastic expression of clustered Pcdh genes in neurons.

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4381060

The specific contributions of cohesin-SA1 to cohesion and gene expression: implications for cancer and development.

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4381060

Differential regulation of telomere and centromere cohesion by the Scc3 homologues SA1 and SA2, respectively, in human cells

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4381060

Cohesin-dependent regulation of Runx genes

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4381060

Experimental acute pancreatitis in PAP/HIP knock-out mice

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4381060

26 September 2018

Identifiers

DOI

10.1093/NAR/GKV144

1 reference

7 August 2017

1 reference

7 August 2017

1 reference

PubMed ID

25735743