Revealing microbial functional activities in the Red Sea sponge Stylissa carteri by metatranscriptomics (Q35185815)

7 August 2017

Revealing microbial functional activities in the Red Sea sponge Stylissa carteri by metatranscriptomics (English)

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7 August 2017

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Stylissa carteri

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Loqmane Seridi

2

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Timothy Ravasi

object named as

Timothy Ravasi

5

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Ute Hentschel

object named as

Ute Hentschel

6

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Christian R. Voolstra

object named as

Christian R Voolstra

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author name string

Lucas Moitinho-Silva

1

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PubMed ID

24920529

7 August 2017

Taewoo Ryu

3

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7 August 2017

9 July 2014

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Environmental Microbiology

7 August 2017

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7 August 2017

16

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7 August 2017

12

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7 August 2017

3683-3698

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The quinoprotein dehydrogenases for methanol and glucose

7 August 2017

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12533

Expression of the human XPB/ERCC-3 excision repair gene-homolog in the sponge Geodia cydonium after exposure to ultraviolet radiation

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12533

Physiology, phylogeny and in situ evidence for bacterial and archaeal nitrifiers in the marine sponge Aplysina aerophoba.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12533

The proton motive force drives the outer membrane transport of cobalamin in Escherichia coli

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12533

An Ordination of the Upland Forest Communities of Southern Wisconsin

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12533

Mesophilic Crenarchaeota: proposal for a third archaeal phylum, the Thaumarchaeota

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12533

Selection of conserved blocks from multiple alignments for their use in phylogenetic analysis

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12533

Sponge mass mortalities in a warming Mediterranean Sea: are cyanobacteria-harboring species worse off?

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12533

Modularity of methylotrophy, revisited

21 January 2018

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https://api.crossref.org/works/10.1111%2F1462-2920.12533

Identification of a fourth formate dehydrogenase in Methylobacterium extorquens AM1 and confirmation of the essential role of formate oxidation in methylotrophy.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12533

The expanding world of methylotrophic metabolism

21 January 2018

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https://api.crossref.org/works/10.1111%2F1462-2920.12533

Phylogeny.fr: robust phylogenetic analysis for the non-specialist

21 January 2018

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https://api.crossref.org/works/10.1111%2F1462-2920.12533

MUSCLE: multiple sequence alignment with high accuracy and high throughput

21 January 2018

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https://api.crossref.org/works/10.1111%2F1462-2920.12533

TonB-dependent receptors-structural perspectives

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12533

Ecology of marine Bacteroidetes: a comparative genomics approach

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12533

Microbial community gene expression in ocean surface waters

21 January 2018

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https://api.crossref.org/works/10.1111%2F1462-2920.12533

Bacterial community profiles in low microbial abundance sponges

21 January 2018

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https://api.crossref.org/works/10.1111%2F1462-2920.12533

Surviving in a marine desert: the sponge loop retains resources within coral reefs

21 January 2018

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https://api.crossref.org/works/10.1111%2F1462-2920.12533

Systematic artifacts in metagenomes from complex microbial communities.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12533

Metatranscriptomic approach to analyze the functional human gut microbiota

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12533

New algorithms and methods to estimate maximum-likelihood phylogenies: assessing the performance of PhyML 3.0

21 January 2018

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https://api.crossref.org/works/10.1111%2F1462-2920.12533

Preparation and metatranscriptomic analyses of host-microbe systems

21 January 2018

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https://api.crossref.org/works/10.1111%2F1462-2920.12533

Molecular evidence for a uniform microbial community in sponges from different oceans

21 January 2018

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https://api.crossref.org/works/10.1111%2F1462-2920.12533

Genomic insights into the marine sponge microbiome

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12533

MEGAN analysis of metagenomic data

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12533

Activity profiles for marine sponge-associated bacteria obtained by 16S rRNA vs 16S rRNA gene comparisons

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12533

Single-cell genomics reveals complex carbohydrate degradation patterns in poribacterial symbionts of marine sponges

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12533

Assessment of methods for amino acid matrix selection and their use on empirical data shows that ad hoc assumptions for choice of matrix are not justified

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12533

Metaproteomics of a gutless marine worm and its symbiotic microbial community reveal unusual pathways for carbon and energy use.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12533

Pyrosequencing reveals highly diverse and species-specific microbial communities in sponges from the Red Sea

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12533

Archaea predominate among ammonia-oxidizing prokaryotes in soils

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12533

Metaproteogenomic analysis of a community of sponge symbionts

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12533

Exploring the role of microorganisms in the disease-like syndrome affecting the sponge Ianthella basta

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12533

The metagenomics RAST server - a public resource for the automatic phylogenetic and functional analysis of metagenomes

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12533

Integrating protein homeostasis strategies in prokaryotes

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12533

Diversity and expression of nitrogen fixation genes in bacterial symbionts of marine sponges

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12533

Specificity and transcriptional activity of microbiota associated with low and high microbial abundance sponges from the Red Sea.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12533

Sizing up metatranscriptomics

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12533

SAR11 clade dominates ocean surface bacterioplankton communities.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12533

Thaumarchaeotes abundant in refinery nitrifying sludges express amoA but are not obligate autotrophic ammonia oxidizers

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12533

Biogeography of pelagic bacterioplankton across an antagonistic temperature-salinity gradient in the Red Sea.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12533

Ankyrin-repeat proteins from sponge symbionts modulate amoebal phagocytosis.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12533

The subsystems approach to genome annotation and its use in the project to annotate 1000 genomes

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12533

Comparative day/night metatranscriptomic analysis of microbial communities in the North Pacific subtropical gyre

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12533

Ammonia-oxidizing archaea as main drivers of nitrification in cold-water sponges

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12533

Metatranscriptomics of the marine sponge Geodia barretti: tackling phylogeny and function of its microbial community

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12533

Remote sensing the phytoplankton seasonal succession of the Red Sea.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12533

Functional convergence of microbes associated with temperate marine sponges

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12533

Metatranscriptomics reveal differences in in situ energy and nitrogen metabolism among hydrothermal vent snail symbionts

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12533

Use of internal standards for quantitative metatranscriptome and metagenome analysis

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12533

New substrates for TonB-dependent transport: do we only see the 'tip of the iceberg'?

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12533

Evidence of nitrification and denitrification in high and low microbial abundance sponges

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12533

Assessing the complex sponge microbiota: core, variable and species-specific bacterial communities in marine sponges

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12533

Integrated metatranscriptomic and metagenomic analyses of stratified microbial assemblages in the open ocean

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12533

Sponge-microbe associations survive high nutrients and temperatures

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12533

Sponge-specific clusters revisited: a comprehensive phylogeny of sponge-associated microorganisms

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12533

Two novel phycoerythrin-associated linker proteins in the marine cyanobacterium Synechococcus sp. strain WH8102

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12533

Physiology and diversity of ammonia-oxidizing archaea

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12533

Preparation of microbial community cDNA for metatranscriptomic analysis in marine plankton

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12533

Development and quantitative analyses of a universal rRNA-subtraction protocol for microbial metatranscriptomics

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12533

Role of rubrerythrin in the oxidative stress response of Porphyromonas gingivalis

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12533

Sponge-associated microorganisms: evolution, ecology, and biotechnological potential

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12533

'Sponge-specific' bacteria are widespread (but rare) in diverse marine environments

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12533

Substrate-controlled succession of marine bacterioplankton populations induced by a phytoplankton bloom.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12533

Functional genomic signatures of sponge bacteria reveal unique and shared features of symbiosis

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12533

Cyanobacterial photosynthesis in the oceans: the origins and significance of divergent light-harvesting strategies

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12533

Misannotations of rRNA can now generate 90% false positive protein matches in metatranscriptomic studies.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12533

Simultaneous assessment of soil microbial community structure and function through analysis of the meta-transcriptome

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12533

Sponge disease: a global threat?

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12533

Temperature thresholds for bacterial symbiosis with a sponge

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12533

Rubrerythrin from the hyperthermophilic archaeon Pyrococcus furiosus is a rubredoxin-dependent, iron-containing peroxidase

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12533

An environmental bacterial taxon with a large and distinct metabolic repertoire

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12533

Metagenomic and metatranscriptomic analysis of microbial community structure and gene expression of activated sludge

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12533

The membrane-associated monooxygenase in the butane-oxidizing Gram-positive bacteriumNocardioidessp. strain CF8 is a novel member of the AMO/PMO family

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12533

Shotgun metaproteomics of the human distal gut microbiota

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12533

The pathology of sponge orange band disease affecting the Caribbean barrel sponge Xestospongia muta

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12533

The functional roles of marine sponges

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12533

Linking abundance and diversity of sponge-associated microbial communities to metabolic differences in host sponges

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12533

Susceptibility to oxidative stress of the Mediterranean demosponge Petrosia ficiformis? : role of endosymbionts and solar irradiance

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12533

A methanotrophic carnivorous sponge

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12533

21 January 2018

Identifiers

DOI

10.1111/1462-2920.12533

1 reference

7 August 2017

1 reference

PubMed ID

24920529