Metaproteogenomic analysis of a community of sponge symbionts (Q34148579)

31 July 2017

Metaproteogenomic analysis of a community of sponge symbionts (English)

1 reference

31 July 2017

Staffan Kjelleberg

4

0 references

Torsten Thomas

series ordinal

5

object named as

Torsten Thomas

1 reference

31 July 2017

Michael Liu

1

1 reference

31 July 2017

Lu Fan

series ordinal

2

1 reference

31 July 2017

Ling Zhong

series ordinal

3

1 reference

31 July 2017

2 February 2012

1 reference

31 July 2017

1 reference

31 July 2017

6

1 reference

31 July 2017

1515-1525

1 reference

31 July 2017

8

1 reference

https://scigraph.springernature.com/pub.10.1038/ismej.2012.1

31 July 2017

0 references

cites work

Evidence of nitrification and denitrification in high and low microbial abundance sponges

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3400405

Oxygen dynamics and transport in the Mediterranean sponge Aplysina aerophoba

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3400405

Marine sponges and their microbial symbionts: love and other relationships

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3400405

Exploration of the normal human bronchoalveolar lavage fluid proteome

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3400405

CDD: a Conserved Domain Database for the functional annotation of proteins

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3400405

Environmental proteomics of microbial plankton in a highly productive coastal upwelling system

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3400405

Functional genomic analysis of an uncultured δ-proteobacterium in the sponge Cymbastela concentrica

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3400405

Proteome insights into the symbiotic relationship between a captive colony of Nasutitermes corniger and its hindgut microbiome

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3400405

Tripartite ATP-independent periplasmic (TRAP) transporters in bacteria and archaea

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3400405

Functional genomic signatures of sponge bacteria reveal unique and shared features of symbiosis

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3400405

Nitrosopumilus maritimus genome reveals unique mechanisms for nitrification and autotrophy in globally distributed marine crenarchaea

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3400405

The Pfam protein families database

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3400405

The structural biochemistry of the superoxide dismutases.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3400405

The genomic basis of trophic strategy in marine bacteria

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3400405

Diversity of aerobic and anaerobic ammonia-oxidizing bacteria in marine sponges

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3400405

Complex nitrogen cycling in the sponge Geodia barretti

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3400405

The Coxiella burnetii ankyrin repeat domain-containing protein family is heterogeneous, with C-terminal truncations that influence Dot/Icm-mediated secretion

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3400405

New substrates for TonB-dependent transport: do we only see the 'tip of the iceberg'?

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3400405

Temperature thresholds for bacterial symbiosis with a sponge

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3400405

Metaproteomics provides functional insight into activated sludge wastewater treatment

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3400405

Role for the Ankyrin eukaryotic-like genes of Legionella pneumophila in parasitism of protozoan hosts and human macrophages

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3400405

The importance of culturing bacterioplankton in the 'omics' age.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3400405

Unique microbial signatures of the alien Hawaiian marine sponge Suberites zeteki

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3400405

Sponge-associated microorganisms: evolution, ecology, and biotechnological potential

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3400405

The housekeeping dipeptide permease is the Escherichia coli heme transporter and functions with two optional peptide binding proteins

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3400405

The genome of the obligately intracellular bacterium Ehrlichia canis reveals themes of complex membrane structure and immune evasion strategies

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3400405

Emended description of the genus Phyllobacterium and description of four novel species associated with plant roots: Phyllobacterium bourgognense sp. nov., Phyllobacterium ifriqiyense sp. nov., Phyllobacterium leguminum sp. nov. and [...]

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3400405

The subsystems approach to genome annotation and its use in the project to annotate 1000 genomes

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3400405

Distribution, expression, and motif variability of ankyrin domain genes in Wolbachia pipientis

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3400405

Phyllobacterium catacumbae sp. nov., a member of the order 'Rhizobiales' isolated from Roman catacombs

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3400405

Methionine sulfoxide reductases in prokaryotes

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3400405

The Yersinia adhesin YadA collagen-binding domain structure is a novel left-handed parallel beta-roll

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3400405

Nitratireductor aquibiodomus gen. nov., sp. nov., a novel alpha-proteobacterium from the marine denitrification system of the Montreal Biodome (Canada).

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3400405

The COG database: an updated version includes eukaryotes

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3400405

SAR11 clade dominates ocean surface bacterioplankton communities.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3400405

The fixA and fixB genes are necessary for anaerobic carnitine reduction in Escherichia coli

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3400405

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3400405

Changes in protein synthesis and identification of proteins specifically induced during solventogenesis in Clostridium acetobutylicum

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3400405

Involvement of coenzyme A esters and two new enzymes, an enoyl-CoA hydratase and a CoA-transferase, in the hydration of crotonobetaine to L-carnitine by Escherichia coli

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3400405

Bacterial community associated with Pfiesteria-like dinoflagellate cultures.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3400405

Transport of C(4)-dicarboxylates in Wolinella succinogenes

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3400405

Binding protein-dependent ABC transport system for glycerol 3-phosphate of Escherichia coli

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3400405

TRAP transporters: a new family of periplasmic solute transport systems encoded by the dctPQM genes of Rhodobacter capsulatus and by homologs in diverse gram-negative bacteria

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3400405

Bacterial glutathione S-transferases: what are they good for?

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3400405

Bacterial carnitine metabolism

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3400405

Repression of 4-hydroxybenzoate transport and degradation by benzoate: a new layer of regulatory control in the Pseudomonas putida beta-ketoadipate pathway

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3400405

Secondary solute transport in bacteria

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3400405

The pho regulon-dependent Ugp uptake system for glycerol-3-phosphate in Escherichia coli is trans inhibited by Pi.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3400405

Choline-glycine betaine pathway confers a high level of osmotic tolerance in Escherichia coli

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3400405

Identification and characterization of dppA, an Escherichia coli gene encoding a periplasmic dipeptide transport protein

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3400405

Current-induced flow through living sponges in nature

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3400405

Occurrence of fatty acid chlorohydrins in jellyfish lipids

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3400405

Physiology, phylogeny and in situ evidence for bacterial and archaeal nitrifiers in the marine sponge Aplysina aerophoba.

5 July 2018

1 reference

https://api.crossref.org/works/10.1038%2FISMEJ.2012.1

Phymm and PhymmBL: metagenomic phylogenetic classification with interpolated Markov models

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FISMEJ.2012.1

Genetic structure and functional implication of the fcb gene cluster for hydrolytic dechlorination of 4-chlorobenzoate from Pseudomonas sp. DJ-12.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FISMEJ.2012.1

The diversity of naturally occurring organobromine compounds

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FISMEJ.2012.1

Identity and potential functions of heterotrophic bacterial isolates from a continuous-upflow fixed-bed reactor for denitrification of drinking water with bacterial polyester as source of carbon and electron donor

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FISMEJ.2012.1

Comparative metaproteomics reveals ocean-scale shifts in microbial nutrient utilization and energy transduction

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FISMEJ.2012.1

Metaproteogenomic analysis of a dominant green sulfur bacterium from Ace Lake, Antarctica.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FISMEJ.2012.1

Community proteomics of a natural microbial biofilm

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FISMEJ.2012.1

Anaerobic ammonia oxidation with nitrogen dioxide by Nitrosomonas eutropha.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FISMEJ.2012.1

Transport functions dominate the SAR11 metaproteome at low-nutrient extremes in the Sargasso Sea.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FISMEJ.2012.1

Spongiadioxins A and B, two new polybrominated dibenzo-p-dioxins from an Australian marine sponge Dysidea dendyi.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FISMEJ.2012.1

What do we really know about sponge-microbial symbioses?

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FISMEJ.2012.1

Crotonobetaine reductase from Escherichia coli consists of two proteins

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/22297557

12 December 2020

inferred from PubMed ID database lookup

Net primary productivity in coral reef sponges

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/22297557

12 December 2020

inferred from PubMed ID database lookup

Isolation of 2,6-dibromophenol from the marine hemichordate, Balanoglossus biminiensis

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/22297557

12 December 2020

inferred from PubMed ID database lookup

Genus-specific associations of marine sponges with group I crenarchaeotes

1 reference

https://api.crossref.org/works/10.1038%2FISMEJ.2012.1

7 January 2021

inferred from DOI database lookup

(7E, 13ξ, 15Z)-14,16-dibromo-7,13,15-hexadecatrien-5-ynoic acid. A novel dibromo acetylenic acid from the marine sponge Xestospongia muta

1 reference

https://api.crossref.org/works/10.1038%2FISMEJ.2012.1

7 January 2021

inferred from DOI database lookup

Identifiers

DOI

10.1038/ISMEJ.2012.1

1 reference

Dimensions Publication ID

31 July 2017

0 references

1 reference

31 July 2017

1 reference