Characterization of cell cycle specific protein interaction networks of the yeast 26S proteasome complex by the QTAX strategy (Q35120072)

6 August 2017

Characterization of cell cycle specific protein interaction networks of the yeast 26S proteasome complex by the QTAX strategy (English)

1 reference

6 August 2017

3

Natasa Przulj

1 reference

6 August 2017

2

Tijana Milenković

1 reference

6 August 2017

Robyn M Kaake

1

1 reference

6 August 2017

Peter Kaiser

series ordinal

4

1 reference

6 August 2017

Lan Huang

series ordinal

5

1 reference

6 August 2017

1 April 2010

1 reference

Journal of Proteome Research

6 August 2017

1 reference

6 August 2017

9

1 reference

6 August 2017

4

1 reference

6 August 2017

2016-2029

1 reference

describes a project that uses

6 August 2017

Cytoscape

1 reference

9 June 2022

https://europepmc.org/search?query=(METHODS:'Cytoscape')

based on heuristic

inferred from PubMed Central ID database lookup

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Proteasome inhibitors in the treatment of multiple myeloma

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Recognition and processing of ubiquitin-protein conjugates by the proteasome

9 July 2018

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RING domain E3 ubiquitin ligases

9 July 2018

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Quantitative proteomics reveals the function of unconventional ubiquitin chains in proteasomal degradation

9 July 2018

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Targeting the ubiquitin system in cancer therapy

9 July 2018

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Functional organization of the S. cerevisiae phosphorylation network

9 July 2018

1 reference

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Uncovering biological network function via graphlet degree signatures.

9 July 2018

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Characterization of the human COP9 signalosome complex using affinity purification and mass spectrometry

9 July 2018

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Characterization of the proteasome interaction network using a QTAX-based tag-team strategy and protein interaction network analysis

9 July 2018

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High-quality binary protein interaction map of the yeast interactome network

9 July 2018

1 reference

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Deregulated proteolysis by the F-box proteins SKP2 and beta-TrCP: tipping the scales of cancer

9 July 2018

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Systematic approach for validating the ubiquitinated proteome

9 July 2018

1 reference

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GraphCrunch: a tool for large network analyses

9 July 2018

1 reference

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Role of proteasomes in disease

9 July 2018

1 reference

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Nuclear fusion during yeast mating occurs by a three-step pathway

9 July 2018

1 reference

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Identifying dynamic interactors of protein complexes by quantitative mass spectrometry

9 July 2018

1 reference

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Network-based prediction of protein function

9 July 2018

1 reference

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Mass spectrometric characterization of the affinity-purified human 26S proteasome complex

9 July 2018

1 reference

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Functions of the proteasome: from protein degradation and immune surveillance to cancer therapy

9 July 2018

1 reference

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Toward a comprehensive atlas of the physical interactome of Saccharomyces cerevisiae

9 July 2018

1 reference

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Ubiquitin chains are remodeled at the proteasome by opposing ubiquitin ligase and deubiquitinating activities.

9 July 2018

1 reference

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Deubiquitinating enzyme Ubp6 functions noncatalytically to delay proteasomal degradation.

9 July 2018

1 reference

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The Forkhead transcription factor Hcm1 regulates chromosome segregation genes and fills the S-phase gap in the transcriptional circuitry of the cell cycle

9 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3140958

The ubiquitin-proteasome pathway in cell cycle control.

9 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3140958

Mapping the murine cardiac 26S proteasome complexes

9 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3140958

An integrated mass spectrometry-based proteomic approach: quantitative analysis of tandem affinity-purified in vivo cross-linked protein complexes (QTAX) to decipher the 26 S proteasome-interacting network.

9 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3140958

Proteasome-associated proteins: regulation of a proteolytic machine

9 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3140958

Survey of clustering algorithms

9 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3140958

Analysis of polyubiquitin conjugates reveals that the Rpn10 substrate receptor contributes to the turnover of multiple proteasome targets

9 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3140958

Nobel committee tags ubiquitin for distinction

9 July 2018

1 reference

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A walk-through of the yeast mating pheromone response pathway

9 July 2018

1 reference

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Function and regulation of cullin-RING ubiquitin ligases

9 July 2018

1 reference

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Detection and localization of protein modifications by high resolution tandem mass spectrometry

9 July 2018

1 reference

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Shp1 and Ubx2 are adaptors of Cdc48 involved in ubiquitin-dependent protein degradation

9 July 2018

1 reference

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Proteins interacting with the 26S proteasome

9 July 2018

1 reference

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The development of proteasome inhibitors as anticancer drugs

9 July 2018

1 reference

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Proteasomes and their kin: proteases in the machine age

9 July 2018

1 reference

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Ratchets and clocks: the cell cycle, ubiquitylation and protein turnover

9 July 2018

1 reference

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A proteomics approach to understanding protein ubiquitination

9 July 2018

1 reference

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Regulation of the yeast amphiphysin homologue Rvs167p by phosphorylation

9 July 2018

1 reference

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Therapeutic anti-cancer targets upstream of the proteasome.

9 July 2018

1 reference

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Multiple associated proteins regulate proteasome structure and function

9 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3140958

The anaphase-promoting complex: it's not just for mitosis any more.

9 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3140958

The ubiquitin-proteasome proteolytic pathway: destruction for the sake of construction

9 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3140958

G proteins and pheromone signaling.

9 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3140958

Antigen processing by the proteasome

9 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3140958

Rvs161p and Rvs167p, the two yeast amphiphysin homologs, function together in vivo

9 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3140958

Proteasomal proteomics: identification of nucleotide-sensitive proteasome-interacting proteins by mass spectrometric analysis of affinity-purified proteasomes

9 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3140958

The 26S proteasome: a molecular machine designed for controlled proteolysis

9 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3140958

Complex formation between Mad1p, Bub1p and Bub3p is crucial for spindle checkpoint function

9 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3140958

Proteolysis and the cell cycle: with this RING I do thee destroy

9 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3140958

The F-box: a new motif for ubiquitin dependent proteolysis in cell cycle regulation and signal transduction

9 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3140958

Whose end is destruction: cell division and the anaphase-promoting complex

9 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3140958

Rvs167p, the budding yeast homolog of amphiphysin, colocalizes with actin patches.

9 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3140958

Comprehensive identification of cell cycle-regulated genes of the yeast Saccharomyces cerevisiae by microarray hybridization

9 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3140958

9 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3140958

A genome-wide transcriptional analysis of the mitotic cell cycle

9 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3140958

Pheromone-dependent G1 cell cycle arrest requires Far1 phosphorylation, but may not involve inhibition of Cdc28-Cln2 kinase, in vivo.

9 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3140958

The regulatory particle of the Saccharomyces cerevisiae proteasome.

9 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3140958

Rvs161p interacts with Fus2p to promote cell fusion in Saccharomyces cerevisiae

9 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3140958

Protein-protein interaction between the RVS161 and RVS167 gene products of Saccharomyces cerevisiae

9 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3140958

Roles of ubiquitin-mediated proteolysis in cell cycle control

9 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3140958

Regulating the yeast kinetochore by ubiquitin-dependent degradation and Skp1p-mediated phosphorylation

9 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3140958

Phosphorylation and proteolysis: partners in the regulation of cell division in budding yeast

9 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3140958

Sst2, a negative regulator of pheromone signaling in the yeast Saccharomyces cerevisiae: expression, localization, and genetic interaction and physical association with Gpa1 (the G-protein alpha subunit).

9 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3140958

SKP1 connects cell cycle regulators to the ubiquitin proteolysis machinery through a novel motif, the F-box

9 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3140958

A ceramide-activated protein phosphatase mediates ceramide-induced G1 arrest of Saccharomyces cerevisiae

9 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3140958

Actin cytoskeleton and budding pattern are altered in the yeast rvs161 mutant: the Rvs161 protein shares common domains with the brain protein amphiphysin

9 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3140958

Checkpoints: controls that ensure the order of cell cycle events

9 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3140958

An insulin-stimulated protein kinase similar to yeast kinases involved in cell cycle control

9 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3140958

Identification of a gene necessary for cell cycle arrest by a negative growth factor of yeast: FAR1 is an inhibitor of a G1 cyclin, CLN2.

9 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3140958

S. cerevisiae genes required for cell cycle arrest in response to loss of microtubule function

9 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3140958

Signal transduction in Saccharomyces cerevisiae requires tyrosine and threonine phosphorylation of FUS3 and KSS1.

9 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3140958

Evaluation of clustering algorithms for protein complex and protein interaction network assembly.

9 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3140958

Intracellular protein degradation from a vague idea through the lysosome and the ubiquitin-proteasome system and on to human diseases and drug targeting: Nobel Lecture, December 8, 2004.

27 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3140958

Quantitative profiling of ubiquitylated proteins reveals proteasome substrates and the substrate repertoire influenced by the Rpn10 receptor pathway

27 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3140958

A ubiquitin stress response induces altered proteasome composition.

27 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3140958

Biological network comparison using graphlet degree distribution

27 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3140958

A tandem affinity tag for two-step purification under fully denaturing conditions: application in ubiquitin profiling and protein complex identification combined with in vivocross-linking

27 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3140958

Modeling interactome: scale-free or geometric?

27 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3140958

Improved flow cytometric analysis of the budding yeast cell cycle.

27 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3140958

Complementary profiling of gene expression at the transcriptome and proteome levels in Saccharomyces cerevisiae

27 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3140958

A tale of two giant proteases

27 September 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/20170199

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identification of BIME as a subunit of the anaphase-promoting complex

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/20170199

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1021/PR1000175

1 reference

6 August 2017

1 reference

6 August 2017

1 reference