Improved rat genome gene prediction by integration of ESTs with RNA-Seq information (Q34974650)

5 August 2017

Improved rat genome gene prediction by integration of ESTs with RNA-Seq information (English)

1 reference

5 August 2017

1 reference

1 reference

11

Allen W Cowley

1 reference

5 August 2017

Liping Li

1

1 reference

5 August 2017

Enguo Chen

2

1 reference

5 August 2017

Chun Yang

3

1 reference

5 August 2017

Jun Zhu

4

1 reference

5 August 2017

Pushkala Jayaraman

5

1 reference

5 August 2017

Jeffrey De Pons

6

1 reference

5 August 2017

Catherine C Kaczorowski

7

1 reference

5 August 2017

Howard J Jacob

8

1 reference

5 August 2017

Andrew S Greene

9

1 reference

5 August 2017

Matthew R Hodges

10

1 reference

5 August 2017

Mingyu Liang

12

1 reference

5 August 2017

Haiming Xu

13

1 reference

5 August 2017

Pengyuan Liu

14

1 reference

5 August 2017

Yan Lu

15

1 reference

5 August 2017

language of work or name

English

0 references

publication date

12 September 2014

1 reference

5 August 2017

1 reference

5 August 2017

31

1 reference

5 August 2017

1

1 reference

5 August 2017

25-32

1 reference

describes a project that uses

5 August 2017

1 reference

Targeting the endothelial progenitor cell surface proteome to identify novel mechanisms that mediate angiogenic efficacy in a rodent model of vascular disease

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4296142

Genome sequencing reveals loci under artificial selection that underlie disease phenotypes in the laboratory rat

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4296142

Narrowing a region on rat chromosome 13 that protects against hypertension in Dahl SS-13BN congenic strains

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4296142

Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4296142

The Sequence Alignment/Map format and SAMtools

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4296142

TopHat: discovering splice junctions with RNA-Seq

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4296142

Annotating genomes with massive-scale RNA sequencing

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4296142

RNA-Seq: a revolutionary tool for transcriptomics

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4296142

Progress and prospects in rat genetics: a community view.

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4296142

Gene prediction in eukaryotes with a generalized hidden Markov model that uses hints from external sources

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4296142

A gene atlas of the mouse and human protein-encoding transcriptomes

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4296142

Genome sequence of the Brown Norway rat yields insights into mammalian evolution

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4296142

Current methods of gene prediction, their strengths and weaknesses

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4296142

BLAT—The BLAST-Like Alignment Tool

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4296142

Genome annotation: from sequence to biology

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4296142

Identification of novel transcripts in annotated genomes using RNA-Seq

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4296142

AUGUSTUS at EGASP: using EST, protein and genomic alignments for improved gene prediction in the human genome

26 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4296142

10.1093/BIOINFORMATICS/BTU608

26 October 2018

Identifiers

DOI

1 reference

journals/bioinformatics/LiCYZJPKJGHCJLXLL15

5 August 2017

1 reference

DBLP Dataset 2021-01-02

release_66zmikhnpbchnjp64yc66v3rhe

28 January 2021

Fatcat ID

1 reference

Fatcat

https://api.fatcat.wiki/v0/release/66zmikhnpbchnjp64yc66v3rhe

mapped directly with Wikidata item

24 November 2022

based on heuristic

PMCID

4296142

1 reference

5 August 2017

1 reference