Population genomic footprints of selection and associations with climate in natural populations of Arabidopsis halleri from the Alps (Q34757010)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24102711%20AND%20SRC:MED&resulttype=core&format=json

27 February 2020

title

Population genomic footprints of selection and associations with climate in natural populations of Arabidopsis halleri from the Alps (English)

1 reference

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27 February 2020

Arabidopsis halleri

1 reference

1

1 reference

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27 February 2020

Christian Rellstab

2

1 reference

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27 February 2020

Andrew Tedder

3

1 reference

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27 February 2020

Felix Gugerli

5

1 reference

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27 February 2020

Kentaro K. Shimizu

6

1 reference

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27 February 2020

Alex Widmer

8

1 reference

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27 February 2020

7

Rolf Holderegger

1 reference

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27 February 2020

author name string

Stefan Zoller

4

1 reference

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27 February 2020

publication date

28 October 2013

1 reference

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27 February 2020

1 reference

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27 February 2020

volume

22

1 reference

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27 February 2020

issue

22

1 reference

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27 February 2020

page(s)

5594-5607

1 reference

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Validation of SNP allele frequencies determined by pooled next-generation sequencing in natural populations of a non-model plant species.

27 February 2020

cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4274019

Estimation of population allele frequencies from next-generation sequencing data: pool-versus individual-based genotyping.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4274019

A road map for molecular ecology

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4274019

Genomic rearrangements and the evolution of clusters of locally adaptive loci.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4274019

Recent and ancient signature of balancing selection around the S-locus in Arabidopsis halleri and A. lyrata

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4274019

Genome-wide patterns of latitudinal differentiation among populations of Drosophila melanogaster from North America

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4274019

Broad-scale adaptive genetic variation in alpine plants is driven by temperature and precipitation

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4274019

The genomics of speciation-with-gene-flow

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4274019

What can patterns of differentiation across plant genomes tell us about adaptation and speciation?

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4274019

The Arabidopsis Information Resource (TAIR): improved gene annotation and new tools

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4274019

Does speciation between Arabidopsis halleri and Arabidopsis lyrata coincide with major changes in a molecular target of adaptation?

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4274019

PoPoolation2: identifying differentiation between populations using sequencing of pooled DNA samples (Pool-Seq)

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4274019

Adaptation to climate across the Arabidopsis thaliana genome

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4274019

Genome-wide genetic marker discovery and genotyping using next-generation sequencing

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4274019

Metal hyperaccumulation and hypertolerance: a model for plant evolutionary genomics.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4274019

Short reads and nonmodel species: exploring the complexities of next-generation sequence assembly and SNP discovery in the absence of a reference genome

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4274019

The CBFs: three arabidopsis transcription factors to cold acclimate

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4274019

Climate change and evolutionary adaptation

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4274019

Applications of next generation sequencing in molecular ecology of non-model organisms

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4274019

Towards identifying genes underlying ecologically relevant traits in Arabidopsis thaliana

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4274019

Population history in Arabidopsis halleri using multilocus analysis

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4274019

Using environmental correlations to identify loci underlying local adaptation

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4274019

The next generation of molecular markers from massively parallel sequencing of pooled DNA samples

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4274019

Genome-wide scans for footprints of natural selection

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4274019

Detecting loci under selection in a hierarchically structured population

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4274019

The Sequence Alignment/Map format and SAMtools

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4274019

Fast and accurate short read alignment with Burrows-Wheeler transform

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4274019

Divergent selection and heterogeneous genomic divergence

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4274019

Ecological genetics in the North Atlantic: environmental gradients and adaptation at specific loci.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4274019

Adaptation from standing genetic variation

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4274019

The use of 'altitude' in ecological research

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4274019

Ecological genomics: understanding gene and genome function in the natural environment

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4274019

An Arabidopsis glutathione peroxidase functions as both a redox transducer and a scavenger in abscisic acid and drought stress responses

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4274019

Poorly known relatives of Arabidopsis thaliana.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4274019

Improved scoring of functional groups from gene expression data by decorrelating GO graph structure

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4274019

PIN proteins perform a rate-limiting function in cellular auxin efflux

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4274019

Evolution of genome size in Brassicaceae

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4274019

MAFFT: a novel method for rapid multiple sequence alignment based on fast Fourier transform

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4274019

Regulation of osmotic stress-responsive gene expression by the LOS6/ABA1 locus in Arabidopsis

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4274019

Analysis of the genome sequence of the flowering plant Arabidopsis thaliana

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4274019

Enhanced AFLP genome scans detect local adaptation in high-altitude populations of a small rodent (Microtus arvalis).

7 July 2018

1 reference

On the Interpretation of χ 2 from Contingency Tables, and the Calculation of P

21 January 2018

1 reference

A map of local adaptation in Arabidopsis thaliana.

21 January 2018

1 reference

Arabidopsis thaliana as a model for the genetics of local adaptation

21 January 2018

1 reference

Evolution of metal hyperaccumulation required cis-regulatory changes and triplication of HMA4.

21 January 2018

1 reference

The identity of plant glutamate receptors.

21 January 2018

1 reference

Common factors drive adaptive genetic variation at different spatial scales in Arabis alpina

21 January 2018

1 reference

Cutadapt removes adapter sequences from high-throughput sequencing reads

21 January 2018

1 reference

Genomic pattern of adaptive divergence in Arabidopsis halleri, a model species for tolerance to heavy metal.

21 January 2018

1 reference

Genomic consequences of multiple speciation processes in a stick insect.

21 January 2018

1 reference

Nuclear and chloroplast DNA phylogeography reveals vicariance among European populations of the model species for the study of metal tolerance, Arabidopsis halleri (Brassicaceae).

21 January 2018

1 reference

Tracking genes of ecological relevance using a genome scan in two independent regional population samples of Arabis alpina.

21 January 2018

1 reference

The allopolyploid Arabidopsis kamchatica originated from multiple individuals of Arabidopsis lyrata and Arabidopsis halleri

21 January 2018

1 reference

Involvement of an ABC transporter in a developmental pathway regulating hypocotyl cell elongation in the light

21 January 2018

1 reference

Adaptive Genetic Variation on the Landscape: Methods and Cases

21 January 2018

1 reference

Rapid evolution of an adaptive cyanogenesis cline in introduced North American white clover (Trifolium repens L.).

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/24102711

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1111/MEC.12521

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24102711%20AND%20SRC:MED&resulttype=core&format=json

27 February 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24102711%20AND%20SRC:MED&resulttype=core&format=json

27 February 2020

1 reference

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