MAFFT: a novel method for rapid multiple sequence alignment based on fast Fourier transform (Q24540347)

6 July 2017

title

MAFFT: a novel method for rapid multiple sequence alignment based on fast Fourier transform (English)

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6 July 2017

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Kazutaka Katoh

1

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6 July 2017

Kazuharu Misawa

series ordinal

2

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6 July 2017

Kei-ichi Kuma

series ordinal

3

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6 July 2017

Takashi Miyata

series ordinal

4

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6 July 2017

publication date

1 July 2002

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6 July 2017

language of work or name

English

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published in

Nucleic Acids Research

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6 July 2017

volume

30

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6 July 2017

issue

14

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6 July 2017

page(s)

3059-3066

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https://www.ncbi.nlm.nih.gov/pubmed/12136088

6 July 2017

1 reference

A comprehensive comparison of multiple sequence alignment programs

25 August 2017

cites work

1 reference

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24 March 2017

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CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice

24 March 2017

1 reference

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24 March 2017

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24 March 2017

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24 March 2017

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24 March 2017

1 reference

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24 March 2017

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24 March 2017

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24 March 2017

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Significant improvement in accuracy of multiple protein sequence alignments by iterative refinement as assessed by reference to structural alignments

24 March 2017

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24 March 2017

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DIALIGN 2: improvement of the segment-to-segment approach to multiple sequence alignment

24 March 2017

1 reference

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Amino acid difference formula to help explain protein evolution

7 April 2017

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Progressive sequence alignment as a prerequisite to correct phylogenetic trees

7 April 2017

1 reference

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Comparative analysis of multiple protein-sequence alignment methods

7 April 2017

1 reference

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10 May 2017

1 reference

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27 September 2017

1 reference

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BAliBASE: a benchmark alignment database for the evaluation of multiple alignment programs

27 September 2017

1 reference

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Multiple DNA and protein sequence alignment based on segment-to-segment comparison

27 September 2017

1 reference

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An efficient method for matching nucleic acid sequences

27 September 2017

1 reference

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A strategy for the rapid multiple alignment of protein sequences. Confidence levels from tertiary structure comparisons

27 September 2017

1 reference

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Two types of amino acid substitutions in protein evolution

27 September 2017

1 reference

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A novel randomized iterative strategy for aligning multiple protein sequences

27 September 2017

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Pattern-induced multi-sequence alignment (PUMA) algorithm employing secondary structure-dependent gap penalties for use in comparative protein modelling

30 May 2018

1 reference

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The efficient computation of position-specific match scores with the fast fourier transform

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=135756

Evaluation of protein multiple alignments by SAM-T99 using the BAliBASE multiple alignment test set.

29 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=135756

Generating benchmarks for multiple sequence alignments and phylogenetic reconstructions

29 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=135756

A weighting system and algorithm for aligning many phylogenetically related sequences

29 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=135756

Optimal alignment between groups of sequences and its application to multiple sequence alignment

29 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=135756

Evolution of RNA polymerases and branching patterns of the three major groups of Archaebacteria

29 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=135756

An Assessment of Amino Acid Exchange Matrices in Aligning Protein Sequences: The Twilight Zone Revisited

29 November 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/12136088

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Evolutionary motif and its biological and structural significance

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/12136088

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1093/NAR/GKF436

1 reference

OpenCitations bibliographic resource ID

6 July 2017

201311

1 reference

Consolidated OpenCitations Corpus – April 2017

OpenCitations bibliographic resource ID

1 reference

6 July 2017

1 reference