The contribution of RNA decay quantitative trait loci to inter-individual variation in steady-state gene expression levels (Q34446672)

2 August 2017

The contribution of RNA decay quantitative trait loci to inter-individual variation in steady-state gene expression levels (English)

1 reference

2 August 2017

quantitative trait locus

1 reference

inferred from title

author

Jean-Baptiste Veyrieras

6

Jean-Baptiste Veyrieras

0 references

Daniel J Gaffney

Daniel J Gaffney

8

0 references

Yoav Gilad

12

Yoav Gilad

1 reference

2 August 2017

Jonathan K. Pritchard

11

Jonathan K Pritchard

1 reference

2 August 2017

Athma A Pai

1

1 reference

2 August 2017

Carolyn E Cain

2

1 reference

2 August 2017

Orna Mizrahi-Man

3

1 reference

2 August 2017

Sherryl De Leon

4

1 reference

2 August 2017

Noah Lewellen

5

1 reference

2 August 2017

Jean-Baptiste Veyrieras

6

1 reference

2 August 2017

Jacob F Degner

7

1 reference

2 August 2017

Joseph K Pickrell

9

1 reference

2 August 2017

Matthew Stephens

10

1 reference

2 August 2017

11 October 2012

1 reference

2 August 2017

1 reference

2 August 2017

8

1 reference

2 August 2017

e1003000

1 reference

2 August 2017

10

1 reference

Creative Commons Attribution 4.0 International

2 August 2017

start time

11 October 2012

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

cites work

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6 July 2018

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Genome-wide assessment of AU-rich elements by the AREScore algorithm

6 July 2018

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Single-molecule mRNA decay measurements reveal promoter- regulated mRNA stability in yeast

6 July 2018

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Transcriptome kinetics is governed by a genome-wide coupling of mRNA production and degradation: a role for RNA Pol II

6 July 2018

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Coupled evolution of transcription and mRNA degradation

6 July 2018

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Regulatory mechanisms and networks couple the different phases of gene expression

6 July 2018

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Resveratrol triggers the pro-apoptotic endoplasmic reticulum stress response and represses pro-survival XBP1 signaling in human multiple myeloma cells.

6 July 2018

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Integrative regulatory mapping indicates that the RNA-binding protein HuR couples pre-mRNA processing and mRNA stability

6 July 2018

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Metabolic labeling of RNA uncovers principles of RNA production and degradation dynamics in mammalian cells

6 July 2018

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Gene expression differences among primates are associated with changes in a histone epigenetic modification

6 July 2018

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The effects of EBV transformation on gene expression levels and methylation profiles

6 July 2018

1 reference

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DNA methylation patterns associate with genetic and gene expression variation in HapMap cell lines

6 July 2018

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RNA sequencing reveals the role of splicing polymorphisms in regulating human gene expression

6 July 2018

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The study of eQTL variations by RNA-seq: from SNPs to phenotypes

6 July 2018

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Database resources of the National Center for Biotechnology Information

6 July 2018

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RNA polymerase II subunits link transcription and mRNA decay to translation.

6 July 2018

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6 July 2018

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A map of human genome variation from population-scale sequencing

6 July 2018

1 reference

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Genome-wide allele-specific analysis: insights into regulatory variation

6 July 2018

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Fatty acid synthase as a potential therapeutic target in cancer

6 July 2018

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Variation in transcription factor binding among humans

6 July 2018

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Understanding mechanisms underlying human gene expression variation with RNA sequencing

6 July 2018

1 reference

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Transcriptome genetics using second generation sequencing in a Caucasian population

6 July 2018

1 reference

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Co-translational mRNA decay in Saccharomyces cerevisiae

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3469421

Genome-wide identification of alternative splice forms down-regulated by nonsense-mediated mRNA decay in Drosophila

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3469421

The Sequence Alignment/Map format and SAMtools

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3469421

Fast and accurate short read alignment with Burrows-Wheeler transform

6 July 2018

1 reference

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Practical issues in imputation-based association mapping

6 July 2018

1 reference

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Database for mRNA half-life of 19 977 genes obtained by DNA microarray analysis of pluripotent and differentiating mouse embryonic stem cells

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3469421

Most mammalian mRNAs are conserved targets of microRNAs

6 July 2018

1 reference

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High-resolution mapping of expression-QTLs yields insight into human gene regulation

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3469421

Dominance and the evolutionary accumulation of cis- and trans-effects on gene expression

6 July 2018

1 reference

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Revealing the architecture of gene regulation: the promise of eQTL studies

6 July 2018

1 reference

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lumi: a pipeline for processing Illumina microarray

6 July 2018

1 reference

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Mapping the genetic architecture of gene expression in human liver

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3469421

Genetics of gene expression and its effect on disease

6 July 2018

1 reference

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Genomics of mRNA turnover.

6 July 2018

1 reference

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The microRNA.org resource: targets and expression

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3469421

A universal framework for regulatory element discovery across all genomes and data types

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3469421

A second generation human haplotype map of over 3.1 million SNPs

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3469421

A genome-wide association study of global gene expression

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3469421

Population genomics of human gene expression

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3469421

MicroRNA targeting specificity in mammals: determinants beyond seed pairing

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3469421

Genetic variants regulating ORMDL3 expression contribute to the risk of childhood asthma

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3469421

GeneTrail--advanced gene set enrichment analysis

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3469421

The highways and byways of mRNA decay

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3469421

Novel mRNA targets for tristetraprolin (TTP) identified by global analysis of stabilized transcripts in TTP-deficient fibroblasts

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3469421

Ubiquitin: tool and target for intracellular NF-kappaB inhibitors.

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3469421

Early nonsense: mRNA decay solves a translational problem

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3469421

Influence of human genome polymorphism on gene expression

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3469421

A novel transcriptional inhibitor induces apoptosis in tumor cells and exhibits antiangiogenic activity.

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3469421

A fast and flexible statistical model for large-scale population genotype data: applications to inferring missing genotypes and haplotypic phase

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3469421

Stability regulation of mRNA and the control of gene expression

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3469421

Mapping determinants of human gene expression by regional and genome-wide association

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3469421

The quantitative genetics of transcription

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3469421

Genetic interactions between polymorphisms that affect gene expression in yeast

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3469421

Combinatorial microRNA target predictions

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3469421

Conserved seed pairing, often flanked by adenosines, indicates that thousands of human genes are microRNA targets

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3469421

AU-rich elements and the control of gene expression through regulated mRNA stability

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3469421

mRNA openers and closers: modulating AU-rich element-controlled mRNA stability by a molecular switch in mRNA secondary structure.

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3469421

Bringing the role of mRNA decay in the control of gene expression into focus

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3469421

Expression of the gene for Dec2, a basic helix-loop-helix transcription factor, is regulated by a molecular clock system

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3469421

The International HapMap Project

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3469421

Impaired feedback regulation of XBP1 as a genetic risk factor for bipolar disorder

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3469421

Exploration, normalization, and summaries of high density oligonucleotide array probe level data

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3469421

Decay rates of human mRNAs: correlation with functional characteristics and sequence attributes

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3469421

Statistical significance for genomewide studies

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3469421

Looking at mRNA decay pathways through the window of molecular evolution

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3469421

Genetics of gene expression surveyed in maize, mouse and man

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3469421

A comparison of normalization methods for high density oligonucleotide array data based on variance and bias

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3469421

Genome-wide analysis of mRNA decay in resting and activated primary human T lymphocytes

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3469421

Identification of unstable transcripts in Arabidopsis by cDNA microarray analysis: rapid decay is associated with a group of touch- and specific clock-controlled genes

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3469421

Global analysis of mRNA decay and abundance in Escherichia coli at single-gene resolution using two-color fluorescent DNA microarrays

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3469421

Precision and functional specificity in mRNA decay

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3469421

Genomic-scale measurement of mRNA turnover and the mechanisms of action of the anti-cancer drug flavopiridol

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3469421

Flavopiridol inactivates P-TEFb and blocks most RNA polymerase II transcription in vivo

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3469421

The cap-to-tail guide to mRNA turnover

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3469421

Stra13 expression is associated with growth arrest and represses transcription through histone deacetylase (HDAC)-dependent and HDAC-independent mechanisms

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3469421

The transcriptional inhibitors, actinomycin D and alpha-amanitin, activate the HIV-1 promoter and favor phosphorylation of the RNA polymerase II C-terminal domain

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3469421

mRNA stability in mammalian cells

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3469421

Actinomycin and DNA transcription

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3469421

Transient transcriptional responses to stress are generated by opposing effects of mRNA production and degradation

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3469421

Genome-wide analysis of mRNA decay rates and their determinants in Arabidopsis thaliana.

27 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3469421

A Genome-Wide Map of Conserved MicroRNA Targets in C. elegans

27 October 2018

1 reference

12 December 2020

Promoter elements regulate cytoplasmic mRNA decay

1 reference

12 December 2020

Variation in gene expression within and among natural populations

1 reference

12 December 2020

Life after transcription--revisiting the fate of messenger RNA

1 reference

12 December 2020

10.1371/JOURNAL.PGEN.1003000

Identifiers

DOI

1 reference

2 August 2017

1 reference

2 August 2017

1 reference