Transcriptional provirus silencing as a crosstalk of de novo DNA methylation and epigenomic features at the integration site (Q34257867)

31 July 2017

title

Transcriptional provirus silencing as a crosstalk of de novo DNA methylation and epigenomic features at the integration site (English)

1 reference

31 July 2017

0 references

Filip Senigl

1

1 reference

31 July 2017

Miroslav Auxt

series ordinal

2

1 reference

31 July 2017

Jirí Hejnar

series ordinal

3

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31 July 2017

language of work or name

English

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publication date

29 February 2012

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31 July 2017

published in

Nucleic Acids Research

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31 July 2017

volume

40

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31 July 2017

issue

12

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31 July 2017

page(s)

5298-5312

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Creative Commons Attribution-NonCommercial 3.0 Unported

31 July 2017

copyright license

start time

7 November 2016

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

cites work

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6 July 2018

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6 July 2018

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6 July 2018

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6 July 2018

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6 July 2018

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6 July 2018

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6 July 2018

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6 July 2018

1 reference

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CpG methylation directly regulates transcriptional activity of the human endogenous retrovirus family HERV-K(HML-2)

6 July 2018

1 reference

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Genome-wide analyses of avian sarcoma virus integration sites

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3384319

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6 July 2018

1 reference

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Transcription start regions in the human genome are favored targets for MLV integration

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3384319

HIV reproducibly establishes a latent infection after acute infection of T cells in vitro.

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3384319

DNA methylation density influences the stability of an epigenetic imprint and Dnmt3a/b-independent de novo methylation.

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3384319

HIV-1 integration in the human genome favors active genes and local hotspots

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3384319

5'-long terminal repeat-selective CpG methylation of latent human T-cell leukemia virus type 1 provirus in vitro and in vivo

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3384319

DNMT1 and DNMT3b cooperate to silence genes in human cancer cells

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3384319

Methylation-mediated proviral silencing is associated with MeCP2 recruitment and localized histone H3 deacetylation

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3384319

The site of HIV-1 integration in the human genome determines basal transcriptional activity and response to Tat transactivation

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3384319

CpG island protects Rous sarcoma virus-derived vectors integrated into nonpermissive cells from DNA methylation and transcriptional suppression

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3384319

Retrovirus vector silencing is de novo methylase independent and marked by a repressive histone code

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3384319

CpG methylation is maintained in human cancer cells lacking DNMT1.

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3384319

Dynamic analysis of proviral induction and De Novo methylation: implications for a histone deacetylase-independent, methylation density-dependent mechanism of transcriptional repression

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3384319

Inhibition of the rous sarcoma virus long terminal repeat-driven transcription by in vitro methylation: different sensitivity in permissive chicken cells versus mammalian cells

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3384319

6 July 2018

Retroviral gene delivery

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High rate of morphological reversion in tumor cell line H-19 associated with permanent transcriptional suppression of the LTR, v-src, LTR provirus

6 July 2018

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6 July 2018

1 reference

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Multiple modifications in cis elements of the long terminal repeat of retroviral vectors lead to increased expression and decreased DNA methylation in embryonic carcinoma cells.

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3384319

De novo methylation, expression, and infectivity of retroviral genomes introduced into embryonal carcinoma cells

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3384319

Analysis of the variations in proviral cytosine methylation that accompany transformation and morphological reversion in a line of Rous sarcoma virus-infected Rat-1 cells

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3384319

Independent mechanisms involved in suppression of the Moloney leukemia virus genome during differentiation of murine teratocarcinoma cells

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3384319

Inactivation of the HIV LTR by DNA CpG methylation: evidence for a role in latency.

6 July 2018

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6 July 2018

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A stem cell-specific silencer in the primer-binding site of a retrovirus

6 July 2018

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Influence of host gene transcription level and orientation on HIV-1 latency in a primary-cell model

6 July 2018

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The inherent processivity of the human de novo methyltransferase 3A (DNMT3A) is enhanced by DNMT3L.

28 October 2018

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KAP1 controls endogenous retroviruses in embryonic stem cells

28 October 2018

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DNA methylation in ES cells requires the lysine methyltransferase G9a but not its catalytic activity

28 October 2018

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Stable gene expression occurs from a minority of integrated HIV-1-based vectors: transcriptional silencing is present in the majority

28 October 2018

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Retrovirus silencing, variegation, extinction, and memory are controlled by a dynamic interplay of multiple epigenetic modifications

28 October 2018

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Mutation of CpGs in the murine stem cell virus retroviral vector long terminal repeat represses silencing in embryonic stem cells

28 October 2018

1 reference

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Preferential integration of human immunodeficiency virus type 1 into genes, cytogenetic R bands and GC-rich DNA regions: insight from the human genome sequence

28 October 2018

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28 October 2018

Identifiers

DOI

10.1093/NAR/GKS197

1 reference

31 July 2017

1 reference

31 July 2017

1 reference