The Set2/Rpd3S pathway suppresses cryptic transcription without regard to gene length or transcription frequency (Q33419366)

26 July 2017

The Set2/Rpd3S pathway suppresses cryptic transcription without regard to gene length or transcription frequency (English)

1 reference

26 July 2017

Brian D Strahl

5

0 references

Andrey A Shabalin

object named as

Andrey A Shabalin

3

0 references

author name string

Colin R Lickwar

1

1 reference

26 July 2017

Bhargavi Rao

2

1 reference

26 July 2017

Andrew B Nobel

4

1 reference

26 July 2017

Jason D Lieb

6

1 reference

26 July 2017

language of work or name

English

0 references

publication date

19 March 2009

1 reference

26 July 2017

1 reference

26 July 2017

4

1 reference

26 July 2017

e4886

1 reference

26 July 2017

3

1 reference

Creative Commons Attribution 4.0 International

26 July 2017

start time

19 March 2009

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

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cites work

Chromatin- and transcription-related factors repress transcription from within coding regions throughout the Saccharomyces cerevisiae genome

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2654109

Roles for Ctk1 and Spt6 in regulating the different methylation states of histone H3 lysine 36.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2654109

Chromatin remodelling at promoters suppresses antisense transcription

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2654109

The fission yeast Jmj2 reverses histone H3 Lysine 4 trimethylation

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2654109

Infrequently transcribed long genes depend on the Set2/Rpd3S pathway for accurate transcription

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2654109

The role of chromatin during transcription

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2654109

Whole-genome comparison of Leu3 binding in vitro and in vivo reveals the importance of nucleosome occupancy in target site selection.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2654109

Cell cycle-specified fluctuation of nucleosome occupancy at gene promoters

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2654109

A genomic code for nucleosome positioning

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2654109

Control of transcription through intragenic patterns of nucleosome composition

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2654109

Eaf3 chromodomain interaction with methylated H3-K36 links histone deacetylation to Pol II elongation

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2654109

Cotranscriptional set2 methylation of histone H3 lysine 36 recruits a repressive Rpd3 complex

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2654109

Histone H3 methylation by Set2 directs deacetylation of coding regions by Rpd3S to suppress spurious intragenic transcription

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2654109

Dimethylation of histone H3 at lysine 36 demarcates regulatory and nonregulatory chromatin genome-wide

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2654109

Genome-wide map of nucleosome acetylation and methylation in yeast

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2654109

Genome-scale identification of nucleosome positions in S. cerevisiae

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2654109

A novel domain in Set2 mediates RNA polymerase II interaction and couples histone H3 K36 methylation with transcript elongation

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2654109

The FACT complex travels with elongating RNA polymerase II and is important for the fidelity of transcriptional initiation in vivo

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2654109

Transcription elongation factors repress transcription initiation from cryptic sites.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2654109

Methylation of histone H3 by Set2 in Saccharomyces cerevisiae is linked to transcriptional elongation by RNA polymerase II

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2654109

Phosphorylation of RNA polymerase II CTD regulates H3 methylation in yeast

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2654109

The Set2 histone methyltransferase functions through the phosphorylated carboxyl-terminal domain of RNA polymerase II.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2654109

Set2 is a nucleosomal histone H3-selective methyltransferase that mediates transcriptional repression.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2654109

Poly(dA-dT) promoter elements increase the equilibrium accessibility of nucleosomal DNA target sites

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2654109

Dissecting the regulatory circuitry of a eukaryotic genome

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2654109

Evidence for nucleosome depletion at active regulatory regions genome-wide

21 June 2018

1 reference

Crossref

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0004886

Combined Action of PHD and Chromo Domains Directs the Rpd3S HDAC to Transcribed Chromatin

21 January 2018

1 reference

Crossref

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0004886

Transcription of chromatin in vitro

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/19295910

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

The presence of nucleosomes on a DNA template prevents initiation by RNA polymerase II in vitro

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/19295910

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Nucleosome positions predicted through comparative genomics

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/19295910

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1371/JOURNAL.PONE.0004886

1 reference

26 July 2017

0 references

1 reference

26 July 2017

1 reference