Genome wide SNP identification in chickpea for use in development of a high density genetic map and improvement of chickpea reference genome assembly. (Q34151417)

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English	Genome wide SNP identification in chickpea for use in development of a high density genetic map and improvement of chickpea reference genome assembly.	scientific article

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scholarly article

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13 March 2020

Genome wide SNP identification in chickpea for use in development of a high density genetic map and improvement of chickpea reference genome assembly (English)

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13 March 2020

Bunyamin Tar'an

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13 March 2020

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Amit A Deokar

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13 March 2020

Larissa Ramsay

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13 March 2020

Andrew G Sharpe

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13 March 2020

Marwan Diapari

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13 March 2020

Anoop Sindhu

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13 March 2020

Kirstin Bett

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13 March 2020

Thomas D Warkentin

7

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13 March 2020

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23 August 2014

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13 March 2020

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13 March 2020

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13 March 2020

708

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13 March 2020

Transcriptome and methylome profiling reveals relics of genome dominance in the mesopolyploid Brassica oleracea

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5 July 2018

Genetic characterization of the acetohydroxyacid synthase (AHAS) gene responsible for resistance to imidazolinone in chickpea (Cicer arietinum L.).

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5 July 2018

Genetic dissection of drought and heat tolerance in chickpea through genome-wide and candidate gene-based association mapping approaches

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5 July 2018

Comprehensive transcriptome assembly of Chickpea (Cicer arietinum L.) using sanger and next generation sequencing platforms: development and applications

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QTL mapping of leafy heads by genome resequencing in the RIL population of Brassica rapa

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5 July 2018

SNP marker discovery, linkage map construction and identification of QTLs for enhanced salinity tolerance in field pea (Pisum sativum L.).

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5 July 2018

Ancient orphan crop joins modern era: gene-based SNP discovery and mapping in lentil

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5 July 2018

Draft genome sequence of chickpea (Cicer arietinum) provides a resource for trait improvement

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5 July 2018

Multi-environment QTL analyses for drought-related traits in a recombinant inbred population of chickpea (Cicer arietinum L.).

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Population genomic and genome-wide association studies of agroclimatic traits in sorghum

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Development of high-throughput SNP-based genotyping in Acacia auriculiformis x A. mangium hybrids using short-read transcriptome data

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5 July 2018

SNP Discovery through Next-Generation Sequencing and Its Applications

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5 July 2018

Can genomics boost productivity of orphan crops?

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High-density SNP genotyping of tomato (Solanum lycopersicum L.) reveals patterns of genetic variation due to breeding.

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Control of meiotic recombination frequency in plant genomes

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SNPs in stress-responsive rice genes: validation, genotyping, functional relevance and population structure

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5 July 2018

High-throughput SNP discovery and genotyping for constructing a saturated linkage map of chickpea (Cicer arietinum L.).

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5 July 2018

A program for annotating and predicting the effects of single nucleotide polymorphisms, SnpEff: SNPs in the genome of Drosophila melanogaster strain w1118; iso-2; iso-3

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5 July 2018

Large-scale development of cost-effective SNP marker assays for diversity assessment and genetic mapping in chickpea and comparative mapping in legumes

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5 July 2018

Development of a dense SNP-based linkage map of an apple rootstock progeny using the Malus Infinium whole genome genotyping array

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5 July 2018

A large maize (Zea mays L.) SNP genotyping array: development and germplasm genotyping, and genetic mapping to compare with the B73 reference genome

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5 July 2018

Novel SSR markers from BAC-end sequences, DArT arrays and a comprehensive genetic map with 1,291 marker loci for chickpea (Cicer arietinum L.)

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5 July 2018

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5 July 2018

Development and use of genic molecular markers (GMMs) for construction of a transcript map of chickpea (Cicer arietinum L.).

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5 July 2018

Construction and application for QTL analysis of a Restriction Site Associated DNA (RAD) linkage map in barley

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5 July 2018

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5 July 2018

High-throughput SNP discovery through deep resequencing of a reduced representation library to anchor and orient scaffolds in the soybean whole genome sequence

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5 July 2018

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5 July 2018

Do genetic recombination and gene density shape the pattern of DNA elimination in rice long terminal repeat retrotransposons?

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5 July 2018

Comparative SNP diversity among four Eucalyptus species for genes from secondary metabolite biosynthetic pathways

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5 July 2018

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5 July 2018

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5 July 2018

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5 July 2018

Genetic structure, diversity, and allelic richness in composite collection and reference set in chickpea (Cicer arietinum L.).

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5 July 2018

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5 July 2018

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5 July 2018

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5 July 2018

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5 July 2018

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5 July 2018

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5 July 2018

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5 July 2018

Effects of recombination rate and gene density on transposable element distributions in Arabidopsis thaliana

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5 July 2018

Methods for genotyping single nucleotide polymorphisms

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5 July 2018

Genetic recombination in plants.

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5 July 2018

Ribosomal DNA spacer-length polymorphisms in barley: mendelian inheritance, chromosomal location, and population dynamics

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5 July 2018

A maximum likelihood method for estimating genome length using genetic linkage data

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5 July 2018

Inheritance of time to flowering in chickpea in a short-season temperate environment.

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21 January 2018

A draft genome sequence of the pulse crop chickpea (Cicer arietinum L.).

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21 January 2018

RECORD: a novel method for ordering loci on a genetic linkage map.

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21 January 2018

Development of an integrated intraspecific map of chickpea (Cicer arietinum L.) using two recombinant inbred line populations.

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21 January 2018

Quantitative trait loci governing carotenoid concentration and weight in seeds of chickpea (Cicer arietinum L.).

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21 January 2018

Variation in crossover rates across a 3-Mb contig of bread wheat (Triticum aestivum) reveals the presence of a meiotic recombination hotspot

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21 January 2018

Assemblies: the good, the bad, the ugly.

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28 October 2018

Transcriptome sequencing of wild chickpea as a rich resource for marker development

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12 December 2020

based on heuristic

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Towards unambiguous transcript mapping in the allotetraploid Brassica napus

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12 December 2020

based on heuristic

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Genetic structure and diversity analysis of the primary gene pool of chickpea using SSR markers

1 reference

https://pubmed.ncbi.nlm.nih.gov/25150411

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

QTL analysis for ascochyta blight resistance in an intraspecific population of chickpea (Cicer arietinum L.).

1 reference

https://pubmed.ncbi.nlm.nih.gov/25150411

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

High-throughput genotyping with the GoldenGate assay in the complex genome of soybean

1 reference

https://pubmed.ncbi.nlm.nih.gov/25150411

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Chromosomal regions associated with segregation distortion in maize

1 reference

https://pubmed.ncbi.nlm.nih.gov/25150411

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Genetic mapping of ascochyta blight resistance in chickpea (Cicer arietinum L.) using a simple sequence repeat linkage map

1 reference

https://pubmed.ncbi.nlm.nih.gov/25150411

12 December 2020

based on heuristic

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Gene-specific markers for the wheat gene Lr34/Yr18/Pm38 which confers resistance to multiple fungal pathogens

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12 December 2020

based on heuristic

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Functional markers developed from multiple loci in GS3 for fine marker-assisted selection of grain length in rice

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12 December 2020

based on heuristic

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Identifiers

10.1186/1471-2164-15-708

1 reference

Europe PubMed Central

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13 March 2020

1 reference

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13 March 2020

1 reference

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13 March 2020

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