Transcriptome and methylome profiling reveals relics of genome dominance in the mesopolyploid Brassica oleracea (Q33900659)

29 July 2017

Transcriptome and methylome profiling reveals relics of genome dominance in the mesopolyploid Brassica oleracea (English)

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29 July 2017

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Brassica oleracea

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9

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30

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Sahana Manoli

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Jacqueline Batley

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Jacqueline Batley

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Jérémy Just

Jérémy Just

14

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France Denoeud

France Denoeud

11

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Sateesh Kagale

Sateesh Kagale

5

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Matthew G Links

Matthew G Links

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Annaliese S Mason

Annaliese S Mason

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Jonathan D. Moore

Jonathan Moore

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Graham J. King

Graham King

29

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David Edwards

David Edwards

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Joseph Christopher Pires

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J Chris Pires

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1

Isobel A P Parkin

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Guy Barker

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Boulos Chalhoub

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Chushin Koh

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Harry Belcram

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Peter G Walley

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Andrew H Paterson

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Haibao Tang

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Stephen J Robinson

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Wayne E Clarke

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Chris D Town

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John Nixon

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Shelby L Bidwell

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Carling Clarke

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Tricia Bender

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Terry Huebert

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Matthew N Nelson

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Xiyin Wang

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Andrew G Sharpe

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10 June 2014

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R77

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describes a project that uses

29 July 2017

ggplot2

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/efetch.fcgi?db=pmc&rettype=xml&id=4097860

ggplot2

2 references

10 June 2022

CZ Software Mentions: A large dataset of software mentions in the biomedical literature

exact match

https://scigraph.springernature.com/pub.10.1186/gb-2014-15-6-r77

0 references

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The emerging biofuel crop Camelina sativa retains a highly undifferentiated hexaploid genome structure

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5 July 2018

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Epigenome-wide inheritance of cytosine methylation variants in a recombinant inbred population.

5 July 2018

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5 July 2018

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Conserved microstructure of the Brassica B Genome of Brassica nigra in relation to homologous regions of Arabidopsis thaliana, B. rapa and B. oleracea

5 July 2018

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Gene body methylation is conserved between plant orthologs and is of evolutionary consequence

5 July 2018

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Biased gene fractionation and dominant gene expression among the subgenomes of Brassica rapa

5 July 2018

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Development of high-density genetic maps for barley and wheat using a novel two-enzyme genotyping-by-sequencing approach

5 July 2018

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Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4097860

Altered patterns of fractionation and exon deletions in Brassica rapa support a two-step model of paleohexaploidy

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4097860

A physical map of Brassica oleracea shows complexity of chromosomal changes following recursive paleopolyploidizations

5 July 2018

1 reference

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The genome of the mesopolyploid crop species Brassica rapa

5 July 2018

1 reference

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Ancestral polyploidy in seed plants and angiosperms

5 July 2018

1 reference

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Differentiation of the maize subgenomes by genome dominance and both ancient and ongoing gene loss

5 July 2018

1 reference

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Dated molecular phylogenies indicate a Miocene origin for Arabidopsis thaliana

5 July 2018

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Conservation and divergence of methylation patterning in plants and animals

5 July 2018

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The evolution of gene duplications: classifying and distinguishing between models

5 July 2018

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BSMAP: whole genome bisulfite sequence MAPping program

5 July 2018

1 reference

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Comparative analysis between homoeologous genome segments of Brassica napus and its progenitor species reveals extensive sequence-level divergence

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4097860

Turning a hobby into a job: how duplicated genes find new functions

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4097860

Rapid SNP discovery and genetic mapping using sequenced RAD markers

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4097860

Genomic plasticity and the diversity of polyploid plants

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4097860

Shotgun bisulphite sequencing of the Arabidopsis genome reveals DNA methylation patterning

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4097860

MAKER: an easy-to-use annotation pipeline designed for emerging model organism genomes

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4097860

A unified classification system for eukaryotic transposable elements

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4097860

Genetic positioning of centromeres using half-tetrad analysis in a 4x-2x cross population of potato.

5 July 2018

1 reference

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CEGMA: a pipeline to accurately annotate core genes in eukaryotic genomes

5 July 2018

1 reference

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The ABC's of comparative genomics in the Brassicaceae: building blocks of crucifer genomes.

5 July 2018

1 reference

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Centromere locations and associated chromosome rearrangements in Arabidopsis lyrata and A. thaliana

5 July 2018

1 reference

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Segmental structure of the Brassica napus genome based on comparative analysis with Arabidopsis thaliana

5 July 2018

1 reference

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GMAP: a genomic mapping and alignment program for mRNA and EST sequences

5 July 2018

1 reference

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Hierarchical scaffolding with Bambus

5 July 2018

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Improving the Arabidopsis genome annotation using maximal transcript alignment assemblies

5 July 2018

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Unravelling angiosperm genome evolution by phylogenetic analysis of chromosomal duplication events

5 July 2018

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The role of lineage-specific gene family expansion in the evolution of eukaryotes

5 July 2018

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An efficient algorithm for large-scale detection of protein families

5 July 2018

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Basic local alignment search tool

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4097860

Shifts in the evolutionary rate and intensity of purifying selection between two Brassica genomes revealed by analyses of orthologous transposons and relics of a whole genome triplication.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4097860

Deciphering the diploid ancestral genome of the Mesohexaploid Brassica rapa.

29 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4097860

Forward and reverse genetics of rapid-cycling Brassica oleracea

29 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4097860

AUGUSTUS at EGASP: using EST, protein and genomic alignments for improved gene prediction in the human genome

29 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4097860

Comparative genomics of Brassica oleracea and Arabidopsis thaliana reveal gene loss, fragmentation, and dispersal after polyploidy

29 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4097860

Patterns of sequence loss and cytosine methylation within a population of newly resynthesized Brassica napus allopolyploids

29 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4097860

DAGchainer: a tool for mining segmental genome duplications and synteny

29 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4097860

Genotypic effects on the frequency of homoeologous and homologous recombination in Brassica napus × B. carinata hybrids

29 October 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/24916971

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Development of public immortal mapping populations, molecular markers and linkage maps for rapid cycling Brassica rapa and B. oleracea

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/24916971

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1186/GB-2014-15-6-R77

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Dimensions Publication ID

29 July 2017

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1 reference

29 July 2017

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