Extensive up-regulation of gene expression in cancer: the normalised use of microarray data (Q34123325)

31 July 2017

title

Extensive up-regulation of gene expression in cancer: the normalised use of microarray data (English)

1 reference

31 July 2017

Hongwei Wang

11

0 references

author name string

Dong Wang

1

1 reference

31 July 2017

Lixin Cheng

2

1 reference

31 July 2017

Yuannv Zhang

3

1 reference

31 July 2017

Ruihong Wu

4

1 reference

31 July 2017

Mingyue Wang

5

1 reference

31 July 2017

Yunyan Gu

6

1 reference

31 July 2017

Wenyuan Zhao

7

1 reference

31 July 2017

Pengfei Li

8

1 reference

31 July 2017

Bin Li

9

1 reference

31 July 2017

Yujing Zhang

10

1 reference

31 July 2017

Yan Huang

12

1 reference

31 July 2017

Chenguang Wang

13

1 reference

31 July 2017

Zheng Guo

14

1 reference

31 July 2017

publication date

10 January 2012

1 reference

31 July 2017

1 reference

31 July 2017

volume

8

1 reference

31 July 2017

issue

3

1 reference

31 July 2017

page(s)

818-827

1 reference

https://api.crossref.org/works/10.1039%2FC2MB05466C

31 July 2017

1 reference

Microarrays as cancer keys: an array of possibilities.

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC2MB05466C

Microarray analysis and tumor classification

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC2MB05466C

Microarray data normalization and transformation

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC2MB05466C

Tackling the widespread and critical impact of batch effects in high-throughput data

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC2MB05466C

Disease signatures are robust across tissues and experiments

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC2MB05466C

Exploration, normalization, and summaries of high density oligonucleotide array probe level data

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC2MB05466C

A comparison of normalization methods for high density oligonucleotide array data based on variance and bias

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC2MB05466C

Model-based analysis of oligonucleotide arrays: expression index computation and outlier detection

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC2MB05466C

Evaluating reproducibility of differential expression discoveries in microarray studies by considering correlated molecular changes

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC2MB05466C

Apparently low reproducibility of true differential expression discoveries in microarray studies.

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC2MB05466C

The effects of normalization on the correlation structure of microarray data

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC2MB05466C

Normalization of two-channel microarrays accounting for experimental design and intensity-dependent relationships

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC2MB05466C

Use of normalization methods for analysis of microarrays containing a high degree of gene effects

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC2MB05466C

Normalization of oligonucleotide arrays based on the least-variant set of genes

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC2MB05466C

Global rank-invariant set normalization (GRSN) to reduce systematic distortions in microarray data

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC2MB05466C

NCBI GEO: mining tens of millions of expression profiles--database and tools update

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC2MB05466C

Thousands of samples are needed to generate a robust gene list for predicting outcome in cancer

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC2MB05466C

A new multitest correction (SGoF) that increases its statistical power when increasing the number of tests

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC2MB05466C

Summaries of Affymetrix GeneChip probe level data

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC2MB05466C

Hallmarks of Cancer: The Next Generation

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC2MB05466C

21 January 2018

The Hallmarks of Cancer

1 reference

https://api.crossref.org/works/10.1039%2FC2MB05466C

Acinar cell apoptosis in Serpini2-deficient mice models pancreatic insufficiency

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC2MB05466C

Isolation and characterization of a novel human pancreas-specific gene, pancpin, that is down-regulated in pancreatic cancer cells

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC2MB05466C

Subset quantile normalization using negative control features

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC2MB05466C

How high is the level of technical noise in microarray data?

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC2MB05466C

Genome-wide co-expression based prediction of differential expressions.

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC2MB05466C

Gene expression profiling in cervical cancer: identification of novel markers for disease diagnosis and therapy.

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC2MB05466C

Gaining confidence in biological interpretation of the microarray data: the functional consistence of the significant GO categories

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC2MB05466C

Multi-level reproducibility of signature hubs in human interactome for breast cancer metastasis

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC2MB05466C

Edge-based scoring and searching method for identifying condition-responsive protein-protein interaction sub-network.

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC2MB05466C

Validation of alternative methods of data normalization in gene co-expression studies

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC2MB05466C

Computational discovery of gene modules and regulatory networks

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC2MB05466C

Integrative analysis of gene expression and copy number alterations using canonical correlation analysis

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC2MB05466C

Differential DNA methylation correlates with differential expression of angiogenic factors in human heart failure

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC2MB05466C

Principles and challenges of genomewide DNA methylation analysis

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC2MB05466C

Preprocessing and downstream analysis of microarray DNA copy number profiles

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC2MB05466C

Normalization of array-CGH data: influence of copy number imbalances

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC2MB05466C

Impact of normalization on miRNA microarray expression profiling

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC2MB05466C

Quality assessment and data analysis for microRNA expression arrays

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC2MB05466C

Aging and environmental exposures alter tissue-specific DNA methylation dependent upon CpG island context

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC2MB05466C

Array-based DNA methylation profiling in follicular lymphoma

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC2MB05466C

Human aging-associated DNA hypermethylation occurs preferentially at bivalent chromatin domains

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC2MB05466C

Age-dependent DNA methylation of genes that are suppressed in stem cells is a hallmark of cancer.

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC2MB05466C

KEGG: kyoto encyclopedia of genes and genomes

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC2MB05466C

Exploiting indirect neighbours and topological weight to predict protein function from protein-protein interactions

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC2MB05466C

Comparing classical pathways and modern networks: towards the development of an edge ontology

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC2MB05466C

Human Protein Reference Database--2009 update

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC2MB05466C

SOURCE: a unified genomic resource of functional annotations, ontologies, and gene expression data

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC2MB05466C

Signal transduction pathway profiling of individual tumor samples

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC2MB05466C

Empirical characterization of the expression ratio noise structure in high-density oligonucleotide arrays

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC2MB05466C

Significance analysis of microarrays applied to the ionizing radiation response

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC2MB05466C

Stratified false discovery control for large-scale hypothesis testing with application to genome-wide association studies

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC2MB05466C

Improving power in genome-wide association studies: weights tip the scale

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC2MB05466C

21 January 2018

Identifiers

DOI

10.1039/C2MB05466C

1 reference

31 July 2017

1 reference