The Cohesin Release Factor WAPL Restricts Chromatin Loop Extension (Q33649701)

28 July 2017

The Cohesin Release Factor WAPL Restricts Chromatin Loop Extension (English)

1 reference

28 July 2017

12

Elzo de Wit

0 references

Bas van Steensel

10

Bas van Steensel

0 references

Robin H van der Weide

Robin H van der Weide

2

0 references

Mario Amendola

Mario Amendola

5

0 references

René H. Medema

René H Medema

9

0 references

author name string

Judith H I Haarhuis

1

1 reference

28 July 2017

Vincent A Blomen

3

1 reference

28 July 2017

J Omar Yáñez-Cuna

4

1 reference

28 July 2017

Marjon S van Ruiten

6

1 reference

28 July 2017

Peter H L Krijger

7

1 reference

28 July 2017

Hans Teunissen

8

1 reference

28 July 2017

Thijn R Brummelkamp

11

1 reference

28 July 2017

Elzo de Wit

12

1 reference

28 July 2017

Benjamin D Rowland

13

1 reference

28 July 2017

language of work or name

English

0 references

publication date

1 May 2017

1 reference

28 July 2017

1 reference

28 July 2017

169

1 reference

28 July 2017

4

1 reference

28 July 2017

693-707.e14

1 reference

describes a project that uses

28 July 2017

ImageJ

1 reference

11 June 2022

https://www.ebi.ac.uk/europepmc/webservices/rest/PMC5422210/fullTextXML

based on heuristic

inferred from PubMed Central ID database lookup

DESeq2

DEseq2

1 reference

CZ Software Mentions: A large dataset of software mentions in the biomedical literature

cites work

Bacillus subtilis SMC complexes juxtapose chromosome arms as they travel from origin to terminus.

1 reference

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Rapid movement and transcriptional re-localization of human cohesin on DNA

14 July 2018

1 reference

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Juicer Provides a One-Click System for Analyzing Loop-Resolution Hi-C Experiments

14 July 2018

1 reference

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Structural organization of the inactive X chromosome in the mouse.

14 July 2018

1 reference

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Formation of Chromosomal Domains by Loop Extrusion.

14 July 2018

1 reference

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Single-Molecule Imaging Reveals a Collapsed Conformational State for DNA-Bound Cohesin

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5422210

CTCF and Cohesin in Genome Folding and Transcriptional Gene Regulation

14 July 2018

1 reference

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Inducible DamID systems for genomic mapping of chromatin proteins in Drosophila

14 July 2018

1 reference

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Cell-of-Origin-Specific 3D Genome Structure Acquired during Somatic Cell Reprogramming

14 July 2018

1 reference

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Condensin-Based Chromosome Organization from Bacteria to Vertebrates

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5422210

Cohesin Releases DNA through Asymmetric ATPase-Driven Ring Opening

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5422210

Releasing Activity Disengages Cohesin's Smc3/Scc1 Interface in a Process Blocked by Acetylation.

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5422210

Insulator dysfunction and oncogene activation in IDH mutant gliomas

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5422210

DNA Entry into and Exit out of the Cohesin Ring by an Interlocking Gate Mechanism

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5422210

HiC-Pro: an optimized and flexible pipeline for Hi-C data processing

14 July 2018

1 reference

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CTCF Binding Polarity Determines Chromatin Looping.

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5422210

Chromatin extrusion explains key features of loop and domain formation in wild-type and engineered genomes

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5422210

Gene essentiality and synthetic lethality in haploid human cells

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5422210

CRISPR Inversion of CTCF Sites Alters Genome Topology and Enhancer/Promoter Function

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5422210

Structural evidence for Scc4-dependent localization of cohesin loading

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5422210

Comparative Hi-C reveals that CTCF underlies evolution of chromosomal domain architecture

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5422210

CTCF establishes discrete functional chromatin domains at the Hox clusters during differentiation

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5422210

Chromatin architecture reorganization during stem cell differentiation.

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5422210

Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5422210

A 3D map of the human genome at kilobase resolution reveals principles of chromatin looping

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5422210

Cohesin and its regulation: on the logic of X-shaped chromosomes

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5422210

HTSeq--a Python framework to work with high-throughput sequencing data

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5422210

Two-dimensional segmentation for analyzing Hi-C data

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5422210

Biochemical reconstitution of topological DNA binding by the cohesin ring

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5422210

Organization of the mitotic chromosome

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5422210

JASPAR 2014: an extensively expanded and updated open-access database of transcription factor binding profiles

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5422210

Topology of mammalian developmental enhancers and their regulatory landscapes

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5422210

A high-resolution map of the three-dimensional chromatin interactome in human cells

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5422210

WAPL-mediated removal of cohesin protects against segregation errors and aneuploidy

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5422210

Cohesin-based chromatin interactions enable regulated gene expression within preexisting architectural compartments

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5422210

Wapl is an essential regulator of chromatin structure and chromosome segregation

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5422210

TopHat2: accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5422210

Deciphering the glycosylome of dystroglycanopathies using haploid screens for lassa virus entry

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5422210

The exact probability distribution of the rank product statistics for replicated experiments

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5422210

STAR: ultrafast universal RNA-seq aligner

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5422210

Self-organization of domain structures by DNA-loop-extruding enzymes

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5422210

Global changes in the nuclear positioning of genes and intra- and interdomain genomic interactions that orchestrate B cell fate

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5422210

Robust 4C-seq data analysis to screen for regulatory DNA interactions.

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5422210

Identifying ChIP-seq enrichment using MACS.

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5422210

Topological domains in mammalian genomes identified by analysis of chromatin interactions

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5422210

Fast gapped-read alignment with Bowtie 2

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5422210

SomaticSniper: identification of somatic point mutations in whole genome sequencing data

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5422210

Isolated NIBPL missense mutations that cause Cornelia de Lange syndrome alter MAU2 interaction

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5422210

Ebola virus entry requires the cholesterol transporter Niemann-Pick C1

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5422210

A framework for variation discovery and genotyping using next-generation DNA sequencing data

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5422210

FIMO: scanning for occurrences of a given motif

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5422210

seqMINER: an integrated ChIP-seq data interpretation platform

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5422210

The rank product method with two samples

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5422210

The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5422210

Systematic reduction of cohesin differentially affects chromosome segregation, condensation, and DNA repair

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5422210

BEDTools: a flexible suite of utilities for comparing genomic features

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5422210

Fast and accurate long-read alignment with Burrows-Wheeler transform

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5422210

Comprehensive mapping of long-range interactions reveals folding principles of the human genome

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5422210

ChIP-seq: using high-throughput sequencing to discover protein-DNA interactions

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5422210

Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5422210

Domain organization of human chromosomes revealed by mapping of nuclear lamina interactions

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5422210

Cohesins functionally associate with CTCF on mammalian chromosome arms

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5422210

Cohesin mediates transcriptional insulation by CCCTC-binding factor

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5422210

Wapl controls the dynamic association of cohesin with chromatin

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5422210

Human Wapl is a cohesin-binding protein that promotes sister-chromatid resolution in mitotic prophase

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5422210

Live-cell imaging reveals a stable cohesin-chromatin interaction after but not before DNA replication

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5422210

Human Scc4 is required for cohesin binding to chromatin, sister-chromatid cohesion, and mitotic progression

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5422210

Rank products: a simple, yet powerful, new method to detect differentially regulated genes in replicated microarray experiments

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5422210

Disseminating the genome: joining, resolving, and separating sister chromatids during mitosis and meiosis

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5422210

Cohesin's binding to chromosomes depends on a separate complex consisting of Scc2 and Scc4 proteins

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5422210

Cohesin acetylation and Wapl-Pds5 oppositely regulate translocation of cohesin along DNA.

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5422210

The dynamic architecture of Hox gene clusters.

30 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5422210

The cohesin ring concatenates sister DNA molecules

30 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5422210

Going the distance: a current view of enhancer action

30 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5422210

Condensin structures chromosomal DNA through topological links

30 October 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/28475897

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1016/J.CELL.2017.04.013

1 reference

28 July 2017

1 reference

28 July 2017

1 reference