Inducible DamID systems for genomic mapping of chromatin proteins in Drosophila (Q37076274)

18 August 2017

Inducible DamID systems for genomic mapping of chromatin proteins in Drosophila (English)

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18 August 2017

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5

Bas van Steensel

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author name string

Alexey V Pindyurin

1

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18 August 2017

Ludo Pagie

2

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18 August 2017

Elena N Kozhevnikova

3

1 reference

18 August 2017

Joris van Arensbergen

4

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18 August 2017

language of work or name

English

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publication date

21 March 2016

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18 August 2017

12

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based on heuristic

inferred from page(s)

published in

Nucleic Acids Research

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18 August 2017

44

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18 August 2017

12

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18 August 2017

5646-5657

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Creative Commons Attribution-NonCommercial 4.0 International

18 August 2017

start time

11 November 2016

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April 2022 Public Data File from Crossref

copyright status

copyrighted

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cites work

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SpDamID: Marking DNA Bound by Protein Complexes Identifies Notch-Dimer Responsive Enhancers

29 September 2017

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Genome-wide analysis links emerin to neuromuscular junction activity in Caenorhabditis elegans.

29 September 2017

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Count-based differential expression analysis of RNA sequencing data using R and Bioconductor

29 September 2017

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Cell-type-specific profiling of gene expression and chromatin binding without cell isolation: assaying RNA Pol II occupancy in neural stem cells

29 September 2017

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A network model of the molecular organization of chromatin in Drosophila

29 September 2017

1 reference

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Direct targets of the D. melanogaster DSXF protein and the evolution of sexual development

29 September 2017

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Directed evolution of a small-molecule-triggered intein with improved splicing properties in mammalian cells

29 September 2017

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Interactions among Polycomb domains are guided by chromosome architecture

29 September 2017

1 reference

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The insulator protein SU(HW) fine-tunes nuclear lamina interactions of the Drosophila genome

29 September 2017

1 reference

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Differential expression analysis for sequence count data

29 September 2017

1 reference

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Systematic protein location mapping reveals five principal chromatin types in Drosophila cells

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4937306

A genetic mosaic approach for neural circuit mapping in Drosophila

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4937306

DamID in C. elegans reveals longevity-associated targets of DAF-16/FoxO

29 September 2017

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A simple method for gene expression and chromatin profiling of individual cell types within a tissue

29 September 2017

1 reference

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Domain organization of human chromosomes revealed by mapping of nuclear lamina interactions

29 September 2017

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Organization and function of the blood-brain barrier in Drosophila.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4937306

Genome-wide, as opposed to local, antisilencing is mediated redundantly by the euchromatic factors Set1 and H2A.Z.

29 September 2017

1 reference

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Detection of in vivo protein-DNA interactions using DamID in mammalian cells

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4937306

Using FlyAtlas to identify better Drosophila melanogaster models of human disease

29 September 2017

1 reference

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An optimized transgenesis system for Drosophila using germ-line-specific phiC31 integrases

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4937306

Prospero acts as a binary switch between self-renewal and differentiation in Drosophila neural stem cells

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4937306

DamID, a new tool for studying plant chromatin profiling in vivo, and its use to identify putative LHP1 target loci

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4937306

DamID: mapping of in vivo protein-genome interactions using tethered DNA adenine methyltransferase

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4937306

Structure and substrate recognition of the Escherichia coli DNA adenine methyltransferase

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4937306

Transcriptional control of glial cell development in Drosophila

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4937306

Regulation of protein activity with small-molecule-controlled inteins

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4937306

Directed evolution of ligand dependence: small-molecule-activated protein splicing

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4937306

Chromatin profiling using targeted DNA adenine methyltransferase

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4937306

Identification of in vivo DNA targets of chromatin proteins using tethered dam methyltransferase

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4937306

Dissecting the Chemistry of Protein Splicing and Its Applications

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4937306

FLP-mediated DNA mobilization to specific target sites in Drosophila chromosomes

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4937306

Engineering the Drosophila genome: chromosome rearrangements by design

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4937306

Intrinsic activity of the Lin-12 and Notch intracellular domains in vivo

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4937306

Targeted oncogene activation by site-specific recombination in transgenic mice

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4937306

Tissue-specific analysis of chromatin state identifies temporal signatures of enhancer activity during embryonic development.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4937306

Molecular maps of the reorganization of genome-nuclear lamina interactions during differentiation

27 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4937306

High-resolution mapping of heterochromatin redistribution in a Drosophila position-effect variegation model

27 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4937306

The FLP recombinase of yeast catalyzes site-specific recombination in the Drosophila genome.

27 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4937306

Developmental variation of the SUUR protein binding correlates with gene regulation and specific chromatin types in D. melanogaster.

27 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4937306

Step-wise methylation of histone H3K9 positions heterochromatin at the nuclear periphery.

4 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4937306

Dicer associates with chromatin to repress genome activity in Schizosaccharomyces pombe.

4 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4937306

Glial cell migration in the eye disc.

4 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4937306

RNAi in the Hedgehog signaling pathway: pFRiPE, a vector for temporally and spatially controlled RNAi in Drosophila.

4 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4937306

Characterization of the Drosophila melanogaster genome at the nuclear lamina.

4 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4937306

Neural circuitry that governs Drosophila male courtship behavior.

4 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4937306

Use of FLP/FRT system to study Drosophila development.

4 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4937306

Introduction of a DNA methyltransferase into Drosophila to probe chromatin structure in vivo.

4 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4937306

Organizing activity of wingless protein in Drosophila.

4 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4937306

4 September 2018

Identifiers

DOI

10.1093/NAR/GKW176

1 reference

18 August 2017

1 reference

18 August 2017

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