QGRS-Conserve: a computational method for discovering evolutionarily conserved G-quadruplex motifs (Q33597625)

28 July 2017

QGRS-Conserve: a computational method for discovering evolutionarily conserved G-quadruplex motifs (English)

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28 July 2017

Scott Frees

1

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28 July 2017

Camille Menendez

series ordinal

2

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28 July 2017

Matt Crum

series ordinal

3

1 reference

28 July 2017

Paramjeet S Bagga

series ordinal

4

1 reference

28 July 2017

1 May 2014

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28 July 2017

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28 July 2017

8

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28 July 2017

8

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https://scigraph.springernature.com/pub.10.1186/1479-7364-8-8

28 July 2017

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21 June 2018

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21 June 2018

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Yin Yang 1 contains G-quadruplex structures in its promoter and 5'-UTR and its expression is modulated by G4 resolvase 1

21 June 2018

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21 June 2018

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21 June 2018

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21 June 2018

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21 June 2018

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21 June 2018

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G-quadruplex RNA structure as a signal for neurite mRNA targeting

21 June 2018

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Essential role for the interaction between hnRNP H/F and a G quadruplex in maintaining p53 pre-mRNA 3'-end processing and function during DNA damage.

21 June 2018

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G-quadruplex DNA sequences are evolutionarily conserved and associated with distinct genomic features in Saccharomyces cerevisiae

21 June 2018

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21 June 2018

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21 June 2018

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21 June 2018

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21 June 2018

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21 June 2018

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21 June 2018

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21 June 2018

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21 June 2018

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21 June 2018

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An RNA G-quadruplex in the 5' UTR of the NRAS proto-oncogene modulates translation

21 June 2018

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Quadruplex DNA: sequence, topology and structure

21 June 2018

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QGRS Mapper: a web-based server for predicting G-quadruplexes in nucleotide sequences

21 June 2018

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Genome-wide prediction of G4 DNA as regulatory motifs: role in Escherichia coli global regulation

21 June 2018

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Kinetic resolution of bimolecular hybridization versus intramolecular folding in nucleic acids by surface plasmon resonance: application to G-quadruplex/duplex competition in human c-myc promoter

21 June 2018

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Human POT1 disrupts telomeric G-quadruplexes allowing telomerase extension in vitro

21 June 2018

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Prevalence of quadruplexes in the human genome

21 June 2018

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Highly prevalent putative quadruplex sequence motifs in human DNA

21 June 2018

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The effect of chemical modifications on the thermal stability of different G-quadruplex-forming oligonucleotides

21 June 2018

1 reference

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Kinetics of tetramolecular quadruplexes

21 June 2018

1 reference

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G-quartets 40 years later: from 5'-GMP to molecular biology and supramolecular chemistry

21 June 2018

1 reference

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Telomerase downregulation induced by the G-quadruplex ligand 12459 in A549 cells is mediated by hTERT RNA alternative splicing.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4017754

Studies on the structure and dynamics of the human telomeric G quadruplex by single-molecule fluorescence resonance energy transfer

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4017754

Helix formation by guanylic acid

21 June 2018

1 reference

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IRESdb: the Internal Ribosome Entry Site database

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4017754

G-quadruplex DNA structures--variations on a theme

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4017754

DSEF-1 is a member of the hnRNP H family of RNA-binding proteins and stimulates pre-mRNA cleavage and polyadenylation in vitro

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4017754

Following G-quartet formation by UV-spectroscopy

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4017754

A guanosine quadruplex and two stable hairpins flank a major cleavage site in insulin-like growth factor II mRNA.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4017754

The G-rich auxiliary downstream element has distinct sequence and position requirements and mediates efficient 3' end pre-mRNA processing through a trans-acting factor

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4017754

Gene function correlates with potential for G4 DNA formation in the human genome

21 June 2018

1 reference

https://api.crossref.org/works/10.1186%2F1479-7364-8-8

Genome-wide computational and expression analyses reveal G-quadruplex DNA motifs as conserved cis-regulatory elements in human and related species.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1479-7364-8-8

The Ontology Lookup Service: more data and better tools for controlled vocabulary queries

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1479-7364-8-8

Deep sequencing-based expression analysis shows major advances in robustness, resolution and inter-lab portability over five microarray platforms

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1479-7364-8-8

G-quadruplexes: the beginning and end of UTRs

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1479-7364-8-8

Optimization of experimental design parameters for high-throughput chromatin immunoprecipitation studies

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1479-7364-8-8

The disruptive positions in human G-quadruplex motifs are less polymorphic and more conserved than their neutral counterparts

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1479-7364-8-8

QGRS-H Predictor: a web server for predicting homologous quadruplex forming G-rich sequence motifs in nucleotide sequences

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1479-7364-8-8

A recurrent 14q32.2 microdeletion mediated by expanded TGG repeats

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1479-7364-8-8

Detection of G-quadruplex DNA in mammalian cells

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4017754

G-quadruplex structures in TP53 intron 3: role in alternative splicing and in production of p53 mRNA isoforms.

30 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4017754

QuadBase: genome-wide database of G4 DNA--occurrence and conservation in human, chimpanzee, mouse and rat promoters and 146 microbes

30 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4017754

Greglist: a database listing potential G-quadruplex regulated genes

30 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4017754

RNA quadruplex-based modulation of gene expression

30 October 2018

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12 December 2020

Unfolding thermodynamics of intramolecular G-quadruplexes: base sequence contributions of the loops

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12 December 2020

A comparison of DNA and RNA quadruplex structures and stabilities

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12 December 2020

An RNA G-quadruplex is essential for cap-independent translation initiation in human VEGF IRES

1 reference

12 December 2020

DNA polymorphisms of the KiSS1 3′ Untranslated region interfere with the folding of a G-rich sequence into G-quadruplex

1 reference

12 December 2020

Determinants of DNA quadruplex structural type: sequence and potassium binding

1 reference

12 December 2020

Identifiers

DOI

10.1186/1479-7364-8-8

1 reference

Dimensions Publication ID

28 July 2017

1047232456

0 references

Fatcat ID

release_l5b74v3gknas7bh45htbcdninq

1 reference

Fatcat

https://api.fatcat.wiki/v0/release/l5b74v3gknas7bh45htbcdninq

24 November 2022

mapped directly with Wikidata item

PMCID

4017754

1 reference

28 July 2017

1 reference