Zinc-finger transcription factors are associated with guanine quadruplex motifs in human, chimpanzee, mouse and rat promoters genome-wide. (Q38612729)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21729868%20AND%20SRC:MED&resulttype=core&format=json

6 February 2020

title

Zinc-finger transcription factors are associated with guanine quadruplex motifs in human, chimpanzee, mouse and rat promoters genome-wide (English)

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6 February 2020

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2

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6 February 2020

author name string

Pankaj Kumar

1

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6 February 2020

Aradhita Baral

3

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6 February 2020

Parveen Kumar

4

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6 February 2020

Dhurjhoti Saha

5

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6 February 2020

Shantanu Chowdhury

6

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6 February 2020

language of work or name

English

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publication date

4 July 2011

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6 February 2020

published in

Nucleic Acids Research

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6 February 2020

volume

39

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6 February 2020

issue

18

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6 February 2020

page(s)

8005-8016

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Creative Commons Attribution-NonCommercial 3.0 Unported

6 February 2020

copyright license

start time

4 October 2016

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

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cites work

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The KRAS promoter responds to Myc-associated zinc finger and poly(ADP-ribose) polymerase 1 proteins, which recognize a critical quadruplex-forming GA-element

6 September 2017

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6 September 2017

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Protein hnRNP A1 and its derivative Up1 unfold quadruplex DNA in the human KRAS promoter: implications for transcription

6 September 2017

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Metastases suppressor NM23-H2 interaction with G-quadruplex DNA within c-MYC promoter nuclease hypersensitive element induces c-MYC expression

6 September 2017

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6 September 2017

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Genome-wide occupancy of SREBP1 and its partners NFY and SP1 reveals novel functional roles and combinatorial regulation of distinct classes of genes

6 September 2017

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6 September 2017

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6 September 2017

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Reevaluation of telomerase inhibition by quadruplex ligands and their mechanisms of action

6 September 2017

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Human telomere, oncogenic promoter and 5'-UTR G-quadruplexes: diverse higher order DNA and RNA targets for cancer therapeutics

6 September 2017

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6 September 2017

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6 September 2017

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G-quadruplex formation within the promoter of the KRAS proto-oncogene and its effect on transcription.

6 September 2017

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6 September 2017

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6 September 2017

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Crystal structure of a zinc-finger–RNA complex reveals two modes of molecular recognition

6 September 2017

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Helix formation by guanylic acid

6 September 2017

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6 September 2017

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The cationic porphyrin TMPyP4 down-regulates c-MYC and human telomerase reverse transcriptase expression and inhibits tumor growth in vivo

6 September 2017

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Direct evidence for a G-quadruplex in a promoter region and its targeting with a small molecule to repress c-MYC transcription

6 September 2017

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Selection of zinc fingers that bind single-stranded telomeric DNA in the G-quadruplex conformation

6 September 2017

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6 September 2017

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Formation of parallel four-stranded complexes by guanine-rich motifs in DNA and its implications for meiosis

6 September 2017

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6 September 2017

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Differential binding of quadruplex structures of muscle-specific genes regulatory sequences by MyoD, MRF4 and myogenin

14 September 2017

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G-quadruplexes in promoters throughout the human genome

14 September 2017

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23 June 2018

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Telomeric DNA dimerizes by formation of guanine tetrads between hairpin loops

23 June 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3185432

Guanine quadruplex DNA structure restricts methylation of CpG dinucleotides genome-wide.

23 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3185432

A novel G-quadruplex motif modulates promoter activity of human thymidine kinase 1.

31 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3185432

Stable G-quadruplexes are found outside nucleosome-bound regions.

31 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3185432

Genome-wide computational and expression analyses reveal G-quadruplex DNA motifs as conserved cis-regulatory elements in human and related species.

31 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3185432

QuadBase: genome-wide database of G4 DNA--occurrence and conservation in human, chimpanzee, mouse and rat promoters and 146 microbes

31 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3185432

Trisubstituted isoalloxazines as a new class of G-quadruplex binding ligands: small molecule regulation of c-kit oncogene expression

31 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3185432

Computational analysis of composite regulatory elements.

31 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3185432

Genome-wide analysis predicts DNA structural motifs as nucleosome exclusion signals

31 August 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/21729868

12 December 2020

inferred from PubMed ID database lookup

Structure and stability of human telomeric sequence

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/21729868

12 December 2020

inferred from PubMed ID database lookup

Enrichment of G4 DNA motif in transcriptional regulatory region of chicken genome

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/21729868

12 December 2020

inferred from PubMed ID database lookup

Identifiers

DOI

10.1093/NAR/GKR536

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21729868%20AND%20SRC:MED&resulttype=core&format=json

release_xd6felk5sjabxpfmxgtkxui5b4

6 February 2020

Fatcat ID

1 reference

Fatcat

https://api.fatcat.wiki/v0/release/xd6felk5sjabxpfmxgtkxui5b4

24 November 2022

mapped directly with Wikidata item

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21729868%20AND%20SRC:MED&resulttype=core&format=json

6 February 2020

1 reference