Identification of the novel candidate genes and variants in boar liver tissues with divergent skatole levels using RNA deep sequencing (Q31132694)

18 August 2017

Identification of the novel candidate genes and variants in boar liver tissues with divergent skatole levels using RNA deep sequencing (English)

1 reference

18 August 2017

0 references

7

Dawit Tesfaye

1 reference

18 August 2017

12

Karl Schellander

1 reference

18 August 2017

Asep Gunawan

1

1 reference

18 August 2017

Sudeep Sahadevan

2

1 reference

18 August 2017

Mehmet Ulas Cinar

3

1 reference

18 August 2017

Christiane Neuhoff

4

1 reference

18 August 2017

Christine Große-Brinkhaus

5

1 reference

18 August 2017

Luc Frieden

6

1 reference

18 August 2017

Ernst Tholen

8

1 reference

18 August 2017

Christian Looft

9

1 reference

18 August 2017

Dessie Salilew Wondim

10

1 reference

18 August 2017

Michael Hölker

11

1 reference

18 August 2017

Muhammad Jasim Uddin

13

1 reference

18 August 2017

language of work or name

English

0 references

publication date

26 August 2013

1 reference

18 August 2017

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18 August 2017

8

1 reference

18 August 2017

8

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18 August 2017

e72298

1 reference

Creative Commons Attribution 4.0 International

18 August 2017

start time

26 August 2013

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

describes a project that uses

DESeq2

object named as

R package DESeq

DESeq

1 reference

CZ Software Mentions: A large dataset of software mentions in the biomedical literature

DESeq2

0 references

cites work

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RNA deep sequencing reveals novel candidate genes and polymorphisms in boar testis and liver tissues with divergent androstenone levels

21 June 2018

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Genetic parameters for androstenone and skatole as indicators of boar taint and their relationship to production and litter size traits in Danish Landrace

21 June 2018

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Liver transcriptome profile in pigs with extreme phenotypes of intramuscular fatty acid composition

21 June 2018

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RNA-Seq approach for genetic improvement of meat quality in pig and evolutionary insight into the substrate specificity of animal carbonyl reductases

21 June 2018

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Detecting differential usage of exons from RNA-seq data

21 June 2018

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The roles of different porcine cytochrome P450 enzymes and cytochrome b5A in skatole metabolism

21 June 2018

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Serum vaspin concentrations are closely related to insulin resistance, and rs77060950 at SERPINA12 genetically defines distinct group with higher serum levels in Japanese population.

21 June 2018

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Different scalding techniques do not affect boar taint.

21 June 2018

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Performances, meat quality and boar taint of castrates and entire male pigs fed a standard and a raw potato starch-enriched diet

21 June 2018

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Genetic parameters for androstenone, skatole, indole, and human nose scores as measures of boar taint and their relationship with finishing traits.

21 June 2018

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Genome-wide association scan and phased haplotype construction for quantitative trait loci affecting boar taint in three pig breeds

21 June 2018

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Exploring the gonad transcriptome of two extreme male pigs with RNA-seq

21 June 2018

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A global view of porcine transcriptome in three tissues from a full-sib pair with extreme phenotypes in growth and fat deposition by paired-end RNA sequencing

21 June 2018

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Development of a candidate reference method for the simultaneous quantitation of the boar taint compounds androstenone, 3α-androstenol, 3β-androstenol, skatole, and indole in pig fat by means of stable isotope dilution analysis-headspace [...]

21 June 2018

1 reference

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Large scale genome-wide association and LDLA mapping study identifies QTLs for boar taint and related sex steroids

21 June 2018

1 reference

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RNA-seq: technical variability and sampling.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3753299

Boar taint detection using parasitoid biosensors

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3753299

The distal end of porcine chromosome 6p is involved in the regulation of skatole levels in boars

21 June 2018

1 reference

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Identification of transcriptome SNPs between Xiphophorus lines and species for assessing allele specific gene expression within F₁ interspecies hybrids

21 June 2018

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Differential expression analysis for sequence count data

21 June 2018

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Examination of testicular gene expression patterns in Yorkshire pigs with high and low levels of boar taint.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3753299

A second look into fibre typing--relation to meat quality

21 June 2018

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BEDTools: a flexible suite of utilities for comparing genomic features

21 June 2018

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RNA-seq: from technology to biology

21 June 2018

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DEGseq: an R package for identifying differentially expressed genes from RNA-seq data

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3753299

Association between SNPs within candidate genes and compounds related to boar taint and reproduction

21 June 2018

1 reference

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The Sequence Alignment/Map format and SAMtools

21 June 2018

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TopHat: discovering splice junctions with RNA-Seq

21 June 2018

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Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

21 June 2018

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RNA-Seq: a revolutionary tool for transcriptomics

21 June 2018

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Cysteine dioxygenase: a robust system for regulation of cellular cysteine levels

21 June 2018

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Gene expression profiles in liver of pigs with extreme high and low levels of androstenone

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3753299

RNA-seq: an assessment of technical reproducibility and comparison with gene expression arrays

21 June 2018

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Mapping and quantifying mammalian transcriptomes by RNA-Seq

21 June 2018

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Genetic and metabolic aspects of androstenone and skatole deposition in pig adipose tissue: a review

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3753299

Gene expression profiles in testis of pigs with extreme high and low levels of androstenone

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3753299

Keratins let liver live: Mutations predispose to liver disease and crosslinking generates Mallory-Denk bodies.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3753299

Keratins modulate hepatic cell adhesion, size and G1/S transition

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3753299

Visceral adipose tissue-derived serine protease inhibitor: a unique insulin-sensitizing adipocytokine in obesity

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3753299

Disassembling adherens junctions: breaking up is hard to do.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3753299

21 June 2018

GeneWise and Genomewise

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3753299

Molecular cloning and functional analysis of porcine SULT1A1 gene and its variant: a single mutation SULT1A1 causes a significant decrease in sulfation activity

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3753299

Identification of small PDZK1-associated protein, DD96/MAP17, as a regulator of PDZK1 and plasma high density lipoprotein levels

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3753299

Primer3 on the WWW for general users and for biologist programmers

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3753299

Cell adhesion: the molecular basis of tissue architecture and morphogenesis

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3753299

The mitochondrial tricarboxylate transport protein. cDNA cloning, primary structure, and comparison with other mitochondrial transport proteins

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3753299

Reactions and significance of cytochrome P-450 enzymes

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3753299

Detection of quantitative trait loci for androstenone, skatole and boar taint in a cross between Large White and Meishan pigs

21 June 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0072298

A novel polymorphism in the 5' untranslated region of the porcine cytochrome b5 (CYB5) gene is associated with decreased fat androstenone level

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0072298

Linkage of high-density lipoprotein-cholesterol concentrations to a locus on chromosome 9p in Mexican Americans

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0072298

Transcriptional profiling by deep sequencing identifies differences in mRNA transcript abundance in in vivo-derived versus in vitro-cultured porcine blastocyst stage embryos.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0072298

Keratin-protein kinase C interaction in reactive oxygen species-induced hepatic cell death through mitochondrial signaling

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0072298

Boar taint is related to endocrine and anatomical changes at puberty but not to aggressive behaviour in entire male pigs

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0072298

A muscle transcriptome analysis identifies positional candidate genes for a complex trait in pig.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0072298

Murine renal organic anion transporters mOAT1 and mOAT3 facilitate the transport of neuroactive tryptophan metabolites

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0072298

A description scheme of biological processes based on elementary bricks of action.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0072298

Cytochrome P450IIE1 (CYP2E1) is induced by skatole and this induction is blocked by androstenone in isolated pig hepatocytes

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0072298

Porcine skeletal muscle differentially expressed gene ATP5B: molecular characterization, expression patterns, and association analysis with meat quality traits.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0072298

Control of the ATP synthase beta subunit expression by RNA-binding proteins TIA-1, TIAR, and HuR.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0072298

Influence of breed and slaughter weight on boar taint prevalence in entire male pigs

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0072298

Strong iron demand during hypoxia-induced erythropoiesis is associated with down-regulation of iron-related proteins and myoglobin in human skeletal muscle

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0072298

Vaspin: a novel serpin with insulin-sensitizing effects

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0072298

Revealing genetic relationships between compounds affecting boar taint and reproduction in pigs

21 January 2018

1 reference

12 December 2020

A single nucleotide polymorphism in the CYP2E1 gene promoter affects skatole content in backfat of boars of two commercial Duroc-sired crossbred populations

1 reference

12 December 2020

Factors regulating the concentrations of 16-androstene steroids in submaxillary salivary glands of pigs

1 reference

12 December 2020

A simulation study on the detection of causal mutations from F2 experiments

1 reference

12 December 2020

Expression levels of 25 genes in liver and testis located in a QTL region for androstenone on SSC7q1.2.

1 reference

12 December 2020

Relationship between metabolism of androstenone and skatole in intact male pigs

1 reference

12 December 2020

Identification of phase I metabolites of 3-methylindole produced by pig liver microsomes

1 reference

12 December 2020

Association and expression quantitative trait loci (eQTL) analysis of porcine AMBP, GC and PPP1R3B genes with meat quality traits

1 reference

12 December 2020

10.1371/JOURNAL.PONE.0072298

Identifiers

DOI

1 reference

18 August 2017

0 references

1 reference

18 August 2017

1 reference