End Sequence Analysis Toolkit (ESAT) expands the extractable information from single-cell RNA-seq data. (Q31118239)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27470110%20AND%20SRC:MED&resulttype=core&format=json

19 March 2020

title

End Sequence Analysis Toolkit (ESAT) expands the extractable information from single-cell RNA-seq data (English)

1 reference

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19 March 2020

0 references

1 reference

1 reference

8

1 reference

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19 March 2020

Manuel Garber

14

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19 March 2020

12

Allon Klein

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19 March 2020

3

Rapolas Zilionis

1 reference

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19 March 2020

13

Maxim N Artyomov

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19 March 2020

author name string

Alan Derr

1

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19 March 2020

Chaoxing Yang

2

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19 March 2020

Alexey Sergushichev

4

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19 March 2020

David M Blodgett

5

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19 March 2020

Sambra Redick

6

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19 March 2020

Rita Bortell

7

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19 March 2020

David M Harlan

9

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19 March 2020

Sebastian Kadener

10

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19 March 2020

Dale L Greiner

11

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19 March 2020

publication date

28 July 2016

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19 March 2020

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19 March 2020

volume

26

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19 March 2020

page(s)

1397-1410

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19 March 2020

issue

10

1 reference

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Single-cell transcriptomes reveal characteristic features of human pancreatic islet cell types

19 March 2020

cites work

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Minireview: Emerging Concepts in Islet Macrophage Biology in Type 2 Diabetes

21 June 2018

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21 June 2018

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21 June 2018

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21 June 2018

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21 June 2018

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High-resolution sequencing and modeling identifies distinct dynamic RNA regulatory strategies

21 June 2018

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21 June 2018

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Comparison of CAGE and RNA-seq transcriptome profiling using clonally amplified and single-molecule next-generation sequencing

21 June 2018

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M2 macrophages promote beta-cell proliferation by up-regulation of SMAD7.

21 June 2018

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21 June 2018

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Massively parallel single-cell RNA-seq for marker-free decomposition of tissues into cell types

21 June 2018

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Parameterizing cell-to-cell regulatory heterogeneities via stochastic transcriptional profiles

21 June 2018

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Salicylate prevents virus-induced type 1 diabetes in the BBDR rat

21 June 2018

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Pathological endoplasmic reticulum stress mediated by the IRE1 pathway contributes to pre-insulitic beta cell apoptosis in a virus-induced rat model of type 1 diabetes

21 June 2018

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Alternative cleavage and polyadenylation: extent, regulation and function

21 June 2018

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TopHat2: accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions

21 June 2018

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CapSeq and CIP-TAP identify Pol II start sites and reveal capped small RNAs as C. elegans piRNA precursors

21 June 2018

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21 June 2018

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Differential analysis of gene regulation at transcript resolution with RNA-seq

21 June 2018

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21 June 2018

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The GENCODE v7 catalog of human long noncoding RNAs: analysis of their gene structure, evolution, and expression

21 June 2018

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A high-throughput chromatin immunoprecipitation approach reveals principles of dynamic gene regulation in mammals

21 June 2018

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21 June 2018

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U1 snRNP determines mRNA length and regulates isoform expression

21 June 2018

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A quantitative atlas of polyadenylation in five mammals

21 June 2018

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21 June 2018

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21 June 2018

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21 June 2018

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Transcriptomes of the major human pancreatic cell types.

21 June 2018

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21 June 2018

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21 June 2018

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Improving RNA-Seq expression estimates by correcting for fragment bias

21 June 2018

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Complex and dynamic landscape of RNA polyadenylation revealed by PAS-Seq

21 June 2018

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Genome-wide translational profiling by ribosome footprinting

21 June 2018

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High-throughput SuperSAGE for digital gene expression analysis of multiple samples using next generation sequencing

21 June 2018

1 reference

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Identifying single-cell molecular programs by stochastic profiling

21 June 2018

1 reference

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Evaluation of statistical methods for normalization and differential expression in mRNA-Seq experiments

21 June 2018

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3' tag digital gene expression profiling of human brain and universal reference RNA using Illumina Genome Analyzer

21 June 2018

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Unbiased reconstruction of a mammalian transcriptional network mediating pathogen responses

21 June 2018

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Pancreatic islet amyloidosis, beta-cell apoptosis, and alpha-cell proliferation are determinants of islet remodeling in type-2 diabetic baboons

21 June 2018

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A role for pericytes as microenvironmental regulators of human skin tissue regeneration

21 June 2018

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Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources

21 June 2018

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NCBI Reference Sequences: current status, policy and new initiatives

21 June 2018

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Virus Infection Induces NF-kappaB-dependent interchromosomal associations mediating monoallelic IFN-beta gene expression

21 June 2018

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High expression rates of human islet amyloid polypeptide induce endoplasmic reticulum stress mediated beta-cell apoptosis, a characteristic of humans with type 2 but not type 1 diabetes

21 June 2018

1 reference

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Genome-wide analysis of mammalian promoter architecture and evolution

21 June 2018

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From birth to death: the complex lives of eukaryotic mRNAs

21 June 2018

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Molecular profiling of angiogenesis markers.

21 June 2018

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Translating data from animal models into methods for preventing human autoimmune diabetes mellitus: caveat emptor and primum non nocere

21 June 2018

1 reference

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Transcriptional analysis of intracytoplasmically stained, FACS-purified cells by high-throughput, quantitative nuclease protection

21 June 2018

1 reference

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TLR activation synergizes with Kilham rat virus infection to induce diabetes in BBDR rats

25 November 2018

1 reference

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The BB rat as a model of human type 1 diabetes

25 November 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/27470110

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1101/GR.207902.116

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27470110%20AND%20SRC:MED&resulttype=core&format=json

19 March 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27470110%20AND%20SRC:MED&resulttype=core&format=json

19 March 2020

1 reference