RNA Polymerase II Regulates Topoisomerase 1 Activity to Favor Efficient Transcription (Q30740300)

16 August 2017

RNA Polymerase II Regulates Topoisomerase 1 Activity to Favor Efficient Transcription (English)

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16 August 2017

1

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3 June 2020

Damian Wojtowicz

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Kelli M Wilson

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Craig J. Thomas

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Teresa M. Przytycka

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David Levens

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3 June 2020

author name string

Kairong Cui

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Ballachanda N Devaiah

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Hye-Jung Chung

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Ka Yim Chan-Salis

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Rajarshi Guha

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Xiaohu Zhang

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3 June 2020

Hongliang Zhang

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3 June 2020

Jason Piotrowski

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3 June 2020

Dinah S Singer

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B Franklin Pugh

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3 June 2020

Fedor Kouzine

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3 June 2020

Brian A Lewis

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Keji Zhao

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Yves Pommier

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3 June 2020

language of work or name

English

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publication date

1 April 2016

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16 August 2017

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3 June 2020

volume

165

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issue

2

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3 June 2020

page(s)

357-371

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Ligand-dependent enhancer activation regulated by topoisomerase-I activity

3 June 2020

cites work

1 reference

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BRD4 assists elongation of both coding and enhancer RNAs by interacting with acetylated histones

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4826470

DNA break mapping reveals topoisomerase II activity genome-wide

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4826470

Mechanism of transcriptional bursting in bacteria

20 June 2018

1 reference

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Brd4 and JMJD6-associated anti-pause enhancers in regulation of transcriptional pause release

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4826470

Transcription-generated torsional stress destabilizes nucleosomes.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4826470

Control of transcriptional elongation

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4826470

Topoisomerases facilitate transcription of long genes linked to autism

20 June 2018

1 reference

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The RNA polymerase II carboxy-terminal domain (CTD) code

20 June 2018

1 reference

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Transcription under torsion

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4826470

BRD4 coordinates recruitment of pause release factor P-TEFb and the pausing complex NELF/DSIF to regulate transcription elongation of interferon-stimulated genes

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4826470

Selective inhibition of tumor oncogenes by disruption of super-enhancers

20 June 2018

1 reference

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Transcription-dependent dynamic supercoiling is a short-range genomic force

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4826470

Transcription forms and remodels supercoiling domains unfolding large-scale chromatin structures

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4826470

DNA Topoisomerases maintain promoters in a state competent for transcriptional activation in Saccharomyces cerevisiae

20 June 2018

1 reference

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Structure and function of the initially transcribing RNA polymerase II-TFIIB complex

20 June 2018

1 reference

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c-Myc is a universal amplifier of expressed genes in lymphocytes and embryonic stem cells

20 June 2018

1 reference

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Promoter-proximal pausing of RNA polymerase II: emerging roles in metazoans

20 June 2018

1 reference

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Architecture of the RNA polymerase II preinitiation complex and mechanism of ATP-dependent promoter opening

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4826470

Updating the RNA polymerase CTD code: adding gene-specific layers

20 June 2018

1 reference

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BRD4 is an atypical kinase that phosphorylates serine2 of the RNA polymerase II carboxy-terminal domain

20 June 2018

1 reference

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The importance of being supercoiled: how DNA mechanics regulate dynamic processes

20 June 2018

1 reference

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Transcriptional inhibition by DNA torsional stress.

20 June 2018

1 reference

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Recruitment timing and dynamics of transcription factors at the Hsp70 loci in living cells

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4826470

Pausing of RNA polymerase II disrupts DNA-specified nucleosome organization to enable precise gene regulation

20 June 2018

1 reference

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Selective inhibition of BET bromodomains

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4826470

Topoisomerase I regulates open chromatin and controls gene expression in vivo

20 June 2018

1 reference

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The phosphoCTD-interacting domain of Topoisomerase I

20 June 2018

1 reference

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Positional dependence of transcriptional inhibition by DNA torsional stress in yeast chromosomes

20 June 2018

1 reference

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Detection of single nucleotide variations in expressed exons of the human genome using RNA-Seq

20 June 2018

1 reference

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DNA Topoisomerase I Inhibitors: Chemistry, Biology, and Interfacial Inhibition

20 June 2018

1 reference

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Camptothecin releases P-TEFb from the inactive 7SK snRNP complex

20 June 2018

1 reference

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Hyperphosphorylation of RNA polymerase II in response to topoisomerase I cleavage complexes and its association with transcription- and BRCA1-dependent degradation of topoisomerase I.

20 June 2018

1 reference

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Role of a tryptophan anchor in human topoisomerase I structure, function and inhibition

20 June 2018

1 reference

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Nonclassic functions of human topoisomerase I: genome-wide and pharmacologic analyses

20 June 2018

1 reference

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High-resolution profiling of histone methylations in the human genome

20 June 2018

1 reference

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The double bromodomain-containing chromatin adaptor Brd4 and transcriptional regulation

20 June 2018

1 reference

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NKX3.1 homeodomain protein binds to topoisomerase I and enhances its activity

20 June 2018

1 reference

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Topoisomerase I inhibitors: camptothecins and beyond

20 June 2018

1 reference

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Controlling the elongation phase of transcription with P-TEFb

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4826470

The FUSE/FBP/FIR/TFIIH system is a molecular machine programming a pulse of c-myc expression

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4826470

Recruitment of P-TEFb for stimulation of transcriptional elongation by the bromodomain protein Brd4

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4826470

The bromodomain protein Brd4 is a positive regulatory component of P-TEFb and stimulates RNA polymerase II-dependent transcription

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4826470

The effect of loss of Brca1 on the sensitivity to anticancer agents in p53-deficient cells.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4826470

Hyperphosphorylated C-terminal repeat domain-associating proteins in the nuclear proteome link transcription to DNA/chromatin modification and RNA processing

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4826470

A Mammalian bromodomain protein, brd4, interacts with replication factor C and inhibits progression to S phase

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4826470

DNA topoisomerases: structure, function, and mechanism

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4826470

TFIIH action in transcription initiation and promoter escape requires distinct regions of downstream promoter DNA.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4826470

Three RNA polymerase II carboxyl-terminal domain kinases display distinct substrate preferences

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4826470

Conversion of topoisomerase I cleavage complexes on the leading strand of ribosomal DNA into 5'-phosphorylated DNA double-strand breaks by replication runoff

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4826470

Reconstitution of the transcription factor TFIIH: assignment of functions for the three enzymatic subunits, XPB, XPD, and cdk7

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4826470

A model for the mechanism of human topoisomerase I

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4826470

Crystal structures of human topoisomerase I in covalent and noncovalent complexes with DNA

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4826470

Topoisomerase I enhances TFIID-TFIIA complex assembly during activation of transcription

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4826470

DNA topology and a minimal set of basal factors for transcription by RNA polymerase II

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4826470

DNA topoisomerase I is involved in both repression and activation of transcription

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4826470

Identification of human DNA topoisomerase I as a cofactor for activator-dependent transcription by RNA polymerase II.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4826470

beta-Lapachone, a novel DNA topoisomerase I inhibitor with a mode of action different from camptothecin

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4826470

Overexpression of human DNA topoisomerase I in insect cells using a baculovirus vector

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4826470

Isolation of type I and II DNA topoisomerase mutants from fission yeast: single and double mutants show different phenotypes in cell growth and chromatin organization

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4826470

Purification of RNA polymerase IIO from calf thymus.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4826470

Supercoiling of the DNA template during transcription

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4826470

Positive supercoiling of DNA greatly diminishes mRNA synthesis in yeast

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4826470

A movie of RNA polymerase II transcription.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4826470

The functional response of upstream DNA to dynamic supercoiling in vivo

25 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4826470

Early effects of topoisomerase I inhibition on RNA polymerase II along transcribed genes in human cells

25 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4826470

Werner protein stimulates topoisomerase I DNA relaxation activity

25 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4826470

Force and velocity measured for single molecules of RNA polymerase.

25 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4826470

The activity of topoisomerase I is modulated by large T antigen during unwinding of the SV40 origin.

25 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4826470

Local domains of supercoiling activate a eukaryotic promoter in vivo

25 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4826470

Purification and characterization of wheat germ DNA topoisomerase I (nicking-closing enzyme)

25 November 2018

1 reference

12 December 2020

Need for DNA topoisomerase activity as a swivel for DNA replication for transcription of ribosomal RNA

1 reference

12 December 2020

Purification of human RNA polymerase II and general transcription factors

1 reference

12 December 2020

Antitumour drugs impede DNA uncoiling by topoisomerase I

1 reference

12 December 2020

10.1016/J.CELL.2016.02.036

Identifiers

DOI

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27058666%20AND%20SRC:MED&resulttype=core&format=json

3 June 2020

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3 June 2020

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